Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 NDUFB4P4-201ENST00000404822 243 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 SNORA36B-201ENST00000410438 131 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 EIF4EP4-201ENST00000424916 578 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 AL121890.1-201ENST00000435457 205 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 AL031183.1-201ENST00000457667 207 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 RNU7-115P-201ENST00000516433 55 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 RNU6-1337P-201ENST00000516525 95 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 RNU5F-4P-201ENST00000516581 114 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 RNU6-919P-201ENST00000516731 104 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 MIR4325-201ENST00000583049 90 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.97□□□□□ -1.77
CHMP3Q9Y3E7 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.77
CHMP3Q9Y3E7 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 MIR422A-201ENST00000362286 90 ntBASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-728P-201ENST00000365375 104 ntBASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-144P-201ENST00000383951 107 ntBASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-80P-201ENST00000384195 107 ntBASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 SNORA20B-201ENST00000384220 132 ntBASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 RPL23AP7-203ENST00000449021 469 ntBASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 SNORA31.21-201ENST00000517180 77 ntBASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 MIR6844-201ENST00000637122 62 ntBASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CHMP3Q9Y3E7 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-1180P-201ENST00000364935 107 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 MIR518C-201ENST00000384822 101 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 Y_RNA.622-201ENST00000411091 108 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 AL353705.1-201ENST00000433468 480 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 RPL23AP58-201ENST00000440453 469 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 RN7SL442P-201ENST00000473804 320 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-1231P-201ENST00000517185 103 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 MIR5688-201ENST00000580619 83 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 RPL30P11-203ENST00000598995 310 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 AL670379.2-201ENST00000604983 252 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 uc_338.14-201ENST00000613162 166 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 TUG1_4.1-201ENST00000619464 181 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 AC090517.3-201ENST00000625170 141 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 SNORA50A-202ENST00000629536 136 ntBASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
CHMP3Q9Y3E7 Y_RNA.521-201ENST00000384560 114 ntBASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 RNU7-107P-201ENST00000459121 61 ntBASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 RNU4-57P-201ENST00000515980 135 ntBASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 RNU2-56P-201ENST00000516826 190 ntBASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 AC093331.1-201ENST00000521474 169 ntBASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 AC027419.1-201ENST00000522976 328 ntBASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.94□□□□□ -1.78
CHMP3Q9Y3E7 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 MIR873-201ENST00000401120 77 ntBASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 AL512604.1-201ENST00000404812 257 ntBASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 MIR1278-201ENST00000408753 81 ntBASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-1077P-201ENST00000410506 102 ntBASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 AC097463.2-201ENST00000421074 142 ntBASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 RPL27AP5-201ENST00000469428 449 ntBASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-659P-201ENST00000516454 104 ntBASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-711P-201ENST00000517255 106 ntBASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-153P-201ENST00000364422 104 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-1336P-201ENST00000383886 109 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 RNU7-14P-201ENST00000459331 62 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 RNU7-57P-201ENST00000459540 60 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 AC008885.1-201ENST00000514930 301 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-63P-201ENST00000516690 95 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 MIR3186-201ENST00000577404 85 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 AC006111.3-201ENST00000622137 383 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 MAPK10-322ENST00000641485 4530 ntBASIC3.92□□□□□ -1.78
CHMP3Q9Y3E7 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 AL356292.1-201ENST00000283110 373 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 SNORA27.1-201ENST00000362604 124 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 SNORD45.3-201ENST00000363836 72 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 Y_RNA.251-201ENST00000364551 99 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 RNU6-1082P-201ENST00000364574 107 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 Y_RNA.393-201ENST00000383936 102 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 SNORD67-201ENST00000390833 111 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 MIR1283-1-201ENST00000408494 87 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 RNU2-52P-201ENST00000410680 190 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 AC016717.1-201ENST00000448918 286 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 RPS27P1-201ENST00000450552 247 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 HMGN1P18-201ENST00000457642 277 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms