Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 AC009487.4-201ENST00000624969 3585 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-944P-201ENST00000364023 107 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 Y_RNA.203-201ENST00000364106 102 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 RNA5SP139-201ENST00000364340 117 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 SNORA48.7-201ENST00000391302 135 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 NDUFB1P1-201ENST00000435191 180 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 AC023449.1-201ENST00000454464 154 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 RPS27P22-201ENST00000478056 241 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 RN7SL323P-201ENST00000494712 295 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 SCARNA17.1-201ENST00000516211 143 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 SCARNA17.2-201ENST00000516334 143 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 AC107934.2-201ENST00000518653 310 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 MIR5047-201ENST00000579212 100 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 AC013412.1-201ENST00000610687 192 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 SCARNA17.4-201ENST00000614296 143 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
HIF3AQ9Y2N7 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 SNORD31B-201ENST00000364977 69 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 MIR23B-201ENST00000384832 97 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 MIR1302-4-201ENST00000408701 150 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 DBIP2-201ENST00000419076 262 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 SNORD11-201ENST00000459124 84 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 RN7SL330P-201ENST00000469709 307 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 AC093663.1-201ENST00000497190 394 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 PRELID2P1-201ENST00000552837 301 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 AC097639.2-201ENST00000603159 172 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 Pinc.1-201ENST00000616452 154 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 AC039056.2-201ENST00000622261 511 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 RNA5SP196-201ENST00000625967 102 ntBASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HIF3AQ9Y2N7 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HIF3AQ9Y2N7 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HIF3AQ9Y2N7 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HIF3AQ9Y2N7 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HIF3AQ9Y2N7 MFSD8-236ENST00000641509 4050 ntBASIC3.34□□□□□ -1.88
HIF3AQ9Y2N7 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-283P-201ENST00000364788 107 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-117P-201ENST00000365415 107 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNA5SP283-201ENST00000365604 119 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-418P-201ENST00000384035 107 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-905P-201ENST00000384434 107 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNA5SP127-201ENST00000411051 133 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RPL27AP5-201ENST00000469428 449 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-948P-201ENST00000516374 107 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNU7-149P-201ENST00000516739 59 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-586P-201ENST00000517265 104 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 SCARNA11.3-201ENST00000517276 130 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 AC106785.1-201ENST00000565935 262 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 RN7SL703P-201ENST00000578485 302 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 UCA1.1-201ENST00000620952 75 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 AC006435.5-201ENST00000624486 112 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 AC110079.1-202ENST00000635213 138 ntBASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HIF3AQ9Y2N7 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-1209P-201ENST00000363655 107 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.796-201ENST00000364268 102 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-1107P-201ENST00000364817 104 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.799-201ENST00000364992 102 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AL359837.1-201ENST00000381357 287 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 CD24P4-201ENST00000382840 243 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.528-201ENST00000384575 108 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AC006989.1-201ENST00000427212 131 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 RPS4XP11-201ENST00000446897 772 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AL021397.1-201ENST00000451806 248 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms