Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 Y_RNA.82-201ENST00000363000 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.92-201ENST00000363043 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.235-201ENST00000364412 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.306-201ENST00000365015 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.312-201ENST00000365089 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.322-201ENST00000365151 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 RNU6-1145P-201ENST00000384246 107 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 MIR7-2-201ENST00000384970 110 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 MIR329-1-201ENST00000385028 80 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 MIR95-201ENST00000385072 81 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 RNU6-159P-201ENST00000391080 106 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.650-201ENST00000459002 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 AC091959.1-201ENST00000495857 238 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.662-201ENST00000516028 97 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.777-201ENST00000516982 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 AC018630.3-201ENST00000542637 96 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 AC008749.1-201ENST00000597650 306 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.771-201ENST00000598668 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.789-201ENST00000622480 102 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 U6.106-201ENST00000636360 105 ntBASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.95
LRFN3Q9BTN0 UBE2WP1-201ENST00000362030 340 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 MIR410-201ENST00000362222 80 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 RNU6-1175P-201ENST00000365200 107 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 DYNLT3P1-201ENST00000378574 347 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 RNY1P5-201ENST00000383890 115 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 RNU6-514P-201ENST00000384208 107 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 RNU6-918P-201ENST00000391219 106 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 AL138827.1-201ENST00000402666 306 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.597-201ENST00000410463 100 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 MTCO1P5-201ENST00000433573 344 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 RN7SL20P-201ENST00000488827 297 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 RNU7-200P-201ENST00000516105 62 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 RNU6-346P-201ENST00000516288 111 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 SNORA27.4-201ENST00000516650 95 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 SNORA48.11-201ENST00000517015 89 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 RPL21P9-201ENST00000556149 474 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 MIR4498-201ENST00000577599 66 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 AL355297.2-201ENST00000604792 129 ntBASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.89□□□□□ -1.95
LRFN3Q9BTN0 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 AC073325.2-201ENST00000339545 159 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 SNORD114-1-201ENST00000362705 72 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.136-201ENST00000363444 102 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 SNORD56.5-201ENST00000364281 72 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.233-201ENST00000364407 101 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 SNORD32B-201ENST00000364460 84 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.240-201ENST00000364469 95 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 RNU6-923P-201ENST00000364753 107 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.383-201ENST00000383855 97 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 RNU6-1289P-201ENST00000384431 106 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 RNU6-1274P-201ENST00000384557 107 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 MIR561-201ENST00000385216 97 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 MIR613-201ENST00000385248 95 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 RPL19P1-201ENST00000411635 428 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 AL390729.2-201ENST00000416137 156 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 UBBP3-201ENST00000445497 241 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 RPL23AP3-201ENST00000453844 468 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 RPS4XP2-201ENST00000458402 793 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 AC091021.1-201ENST00000468051 388 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 SNORA40.9-201ENST00000515895 93 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 MTND5P41-201ENST00000517498 206 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 CYCSP23-201ENST00000519781 313 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 MRPS18CP4-201ENST00000535821 231 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 TGIF1P1-201ENST00000558095 802 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 AP000942.3-201ENST00000603702 160 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 TCL6_2.1-201ENST00000615162 119 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 AC005562.2-201ENST00000618264 111 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 AC108206.1-201ENST00000570186 4159 ntBASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
LRFN3Q9BTN0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 ZNF204P-201ENST00000416749 2397 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 Y_RNA.230-201ENST00000364348 109 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 RNU6-804P-201ENST00000384286 107 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 MIR27B-201ENST00000385129 97 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 AC112220.1-201ENST00000434628 355 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 MRPS10P1-201ENST00000448483 130 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 SNORD2.1-201ENST00000458762 69 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 AC010401.1-201ENST00000463867 348 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 AC090515.1-201ENST00000465295 476 ntBASIC2.87□□□□□ -1.95
LRFN3Q9BTN0 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms