Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ZNF204P-201ENST00000416749 2397 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 Y_RNA.81-201ENST00000362997 102 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 RNU4-80P-201ENST00000363200 141 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 SNORA51.4-201ENST00000364993 124 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 SNORD116-18-201ENST00000383961 92 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 RNU6-1274P-201ENST00000384557 107 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 RPL39P40-201ENST00000445481 146 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 HMGB3P3-201ENST00000510526 400 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 RNU6-1198P-201ENST00000516904 67 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 AC109329.2-201ENST00000519658 482 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 MIR3145-201ENST00000580727 82 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 AL008718.3-201ENST00000610217 321 ntBASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CLIP3Q96DZ5 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.568-201ENST00000384742 113 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.571-201ENST00000384753 98 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 MIR634-201ENST00000385208 97 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 AC024067.1-201ENST00000426199 223 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 RN7SL75P-201ENST00000461926 281 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 MIR2682-201ENST00000580305 110 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 UBL5P2-201ENST00000583788 219 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 AC010999.1-201ENST00000611856 324 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 uc_338.25-201ENST00000613756 156 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 MTND1P7-201ENST00000632801 297 ntBASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CLIP3Q96DZ5 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 U3.9-201ENST00000363823 204 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 RNU6-818P-201ENST00000364837 108 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 RNA5SP125-201ENST00000364843 120 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.497-201ENST00000384447 98 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 SNORA22C-201ENST00000384614 134 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 ELOCP21-201ENST00000412558 336 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 AC112220.1-201ENST00000434628 355 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 AL162725.1-201ENST00000435405 301 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 HMGN1P18-201ENST00000457642 277 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 SNORA48.11-201ENST00000517015 89 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 AP002001.1-203ENST00000534002 267 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 EIF4A1P12-201ENST00000551910 141 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 AC018448.1-201ENST00000552843 316 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 AC023043.3-201ENST00000593113 385 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 AL355297.2-201ENST00000604792 129 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
CLIP3Q96DZ5 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3□□□□□ -1.93
CLIP3Q96DZ5 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3□□□□□ -1.93
CLIP3Q96DZ5 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CLIP3Q96DZ5 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3□□□□□ -1.93
CLIP3Q96DZ5 RNU6-1272P-201ENST00000362776 107 ntBASIC3□□□□□ -1.93
CLIP3Q96DZ5 RNU1-109P-201ENST00000383960 147 ntBASIC3□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.400-201ENST00000383963 111 ntBASIC3□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.412-201ENST00000384001 104 ntBASIC3□□□□□ -1.93
CLIP3Q96DZ5 SNORD15B-201ENST00000384714 146 ntBASIC3□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.595-201ENST00000410403 105 ntBASIC3□□□□□ -1.93
CLIP3Q96DZ5 RNA5SP229-201ENST00000410809 99 ntBASIC3□□□□□ -1.93
CLIP3Q96DZ5 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3□□□□□ -1.93
CLIP3Q96DZ5 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3□□□□□ -1.93
CLIP3Q96DZ5 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3□□□□□ -1.93
CLIP3Q96DZ5 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3□□□□□ -1.93
CLIP3Q96DZ5 MTND5P35-201ENST00000557537 1720 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 RNU6-1168P-201ENST00000390831 104 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.586-201ENST00000391146 98 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 RAB28P5-201ENST00000427490 651 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 AC022018.1-201ENST00000430685 241 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 RNU6-625P-201ENST00000459412 107 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 AC007215.1-201ENST00000464893 276 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 AC083906.5-201ENST00000503722 328 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 RPPH1-2P-201ENST00000516688 293 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 RNA5SP54-201ENST00000516951 92 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 AC018630.3-201ENST00000542637 96 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 AL365222.1-201ENST00000614661 98 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 AC004467.1-201ENST00000615678 330 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 AC091932.3-201ENST00000624223 323 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 176.7 ms