Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS3Q8IXF0 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
NPAS3Q8IXF0 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
NPAS3Q8IXF0 AC073346.2-201ENST00000624724 2058 ntBASIC3.96□□□□□ -1.77
NPAS3Q8IXF0 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 ZNF962P-201ENST00000443465 3140 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 RNU6-529P-201ENST00000363383 104 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 SNORD77.3-201ENST00000391113 65 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 Y_RNA.620-201ENST00000411009 88 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 MRPL35P3-201ENST00000421557 364 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 snoU13.24-201ENST00000458998 104 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 SNORD65B-201ENST00000459126 73 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 RNU7-164P-201ENST00000459221 62 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 RPS26P48-201ENST00000491713 339 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 RPS27AP10-201ENST00000496103 208 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 SNORA74D-201ENST00000516404 141 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 SNORA70.24-201ENST00000517233 118 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 RN7SKP57-201ENST00000517248 293 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 AC107934.2-201ENST00000518653 310 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 RNU1-30P-201ENST00000606575 163 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 MIR7975-201ENST00000619350 68 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 MIR376A2-201ENST00000636782 80 ntBASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.96□□□□□ -1.78
NPAS3Q8IXF0 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 Y_RNA.40-201ENST00000362645 93 ntBASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 RNA5SP306-201ENST00000411087 107 ntBASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 ATP5A1P2-201ENST00000412323 255 ntBASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 RBMY2UP-201ENST00000453474 324 ntBASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 RNU6-126P-201ENST00000516685 103 ntBASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.95□□□□□ -1.78
NPAS3Q8IXF0 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 Y_RNA.94-201ENST00000363068 106 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 RNU6-217P-201ENST00000384164 104 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 RNVU1-14-201ENST00000384770 164 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 SNORA12-201ENST00000391162 147 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 RPS12P18-201ENST00000442381 270 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 AC113410.1-201ENST00000505029 247 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 RNU7-123P-201ENST00000515911 60 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 JPX_2.1-201ENST00000614161 69 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 AC091304.10-201ENST00000641554 121 ntBASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NPAS3Q8IXF0 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 PHKBP1-201ENST00000450951 1951 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 RNU6-60P-201ENST00000364792 103 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 Y_RNA.454-201ENST00000384224 113 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 MIR218-2-201ENST00000385006 110 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 AC245102.2-201ENST00000448956 180 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 RNU6-693P-201ENST00000516134 107 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 Y_RNA.666-201ENST00000516187 112 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 AL591424.2-201ENST00000617023 128 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 U6.73-201ENST00000619194 103 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 AL592437.2-201ENST00000421655 2434 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.93□□□□□ -1.78
NPAS3Q8IXF0 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 RNU6-832P-201ENST00000363319 107 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 Y_RNA.155-201ENST00000363632 101 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 SNORA51.4-201ENST00000364993 124 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 MIR586-201ENST00000385035 97 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 MIR577-201ENST00000385196 96 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 AC096949.1-201ENST00000412047 152 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 TOMM22P1-201ENST00000418578 312 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 AC008155.2-201ENST00000464337 397 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 HMGN2P9-201ENST00000476875 229 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 AC010598.1-201ENST00000510378 103 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 MRPS17P9-201ENST00000511924 393 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 MIR4777-201ENST00000583710 86 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 MIR548BB-201ENST00000626714 66 ntBASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
NPAS3Q8IXF0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms