Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AC009878.1-201ENST00000621819 340 ntBASIC0.04□□□□□ -2.4
NUP98P52948 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.04□□□□□ -2.4
NUP98P52948 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.04□□□□□ -2.4
NUP98P52948 Y_RNA.170-201ENST00000363746 110 ntBASIC0.03□□□□□ -2.4
NUP98P52948 RNU6-1305P-201ENST00000364353 104 ntBASIC0.03□□□□□ -2.4
NUP98P52948 SNORA67.2-201ENST00000384300 149 ntBASIC0.03□□□□□ -2.4
NUP98P52948 MTND1P20-201ENST00000430341 950 ntBASIC0.03□□□□□ -2.4
NUP98P52948 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.03□□□□□ -2.4
NUP98P52948 AC116562.3-201ENST00000506136 177 ntBASIC0.03□□□□□ -2.4
NUP98P52948 AC025647.1-201ENST00000517879 253 ntBASIC0.03□□□□□ -2.4
NUP98P52948 AP001372.4-201ENST00000524889 472 ntBASIC0.03□□□□□ -2.4
NUP98P52948 AC068587.5-201ENST00000528506 175 ntBASIC0.03□□□□□ -2.4
NUP98P52948 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
NUP98P52948 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.03□□□□□ -2.4
NUP98P52948 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.03□□□□□ -2.4
NUP98P52948 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.03□□□□□ -2.4
NUP98P52948 MIR3192-201ENST00000584920 77 ntBASIC0.03□□□□□ -2.4
NUP98P52948 AP000907.4-201ENST00000604143 237 ntBASIC0.03□□□□□ -2.4
NUP98P52948 AL359999.1-201ENST00000604513 294 ntBASIC0.03□□□□□ -2.4
NUP98P52948 U6.73-201ENST00000619194 103 ntBASIC0.03□□□□□ -2.4
NUP98P52948 U8.16-201ENST00000391279 133 ntBASIC0.03□□□□□ -2.4
NUP98P52948 MIR1185-1-201ENST00000408598 86 ntBASIC0.03□□□□□ -2.4
NUP98P52948 USP9YP25-201ENST00000457708 443 ntBASIC0.03□□□□□ -2.4
NUP98P52948 AC104692.1-201ENST00000472406 90 ntBASIC0.03□□□□□ -2.4
NUP98P52948 SNORD111.1-201ENST00000516421 86 ntBASIC0.03□□□□□ -2.4
NUP98P52948 AC027419.1-201ENST00000522976 328 ntBASIC0.03□□□□□ -2.4
NUP98P52948 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
NUP98P52948 RNA5SP264-201ENST00000363115 107 ntBASIC0.02□□□□□ -2.41
NUP98P52948 RNU6-833P-201ENST00000363486 107 ntBASIC0.02□□□□□ -2.41
NUP98P52948 Y_RNA.185-201ENST00000363894 100 ntBASIC0.02□□□□□ -2.41
NUP98P52948 Y_RNA.265-201ENST00000364677 108 ntBASIC0.02□□□□□ -2.41
NUP98P52948 SNORD114-15-201ENST00000364687 72 ntBASIC0.02□□□□□ -2.41
NUP98P52948 RNU6-827P-201ENST00000365553 106 ntBASIC0.02□□□□□ -2.41
NUP98P52948 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.02□□□□□ -2.41
NUP98P52948 RNU6-1029P-201ENST00000384109 107 ntBASIC0.02□□□□□ -2.41
NUP98P52948 SNORA36A-201ENST00000384221 132 ntBASIC0.02□□□□□ -2.41
NUP98P52948 MTATP6P16-201ENST00000434543 526 ntBASIC0.02□□□□□ -2.41
NUP98P52948 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.02□□□□□ -2.41
NUP98P52948 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.02□□□□□ -2.41
NUP98P52948 MIR3941-201ENST00000582572 103 ntBASIC0.02□□□□□ -2.41
NUP98P52948 AP001180.6-201ENST00000584918 159 ntBASIC0.02□□□□□ -2.41
NUP98P52948 AC096720.1-201ENST00000604441 183 ntBASIC0.02□□□□□ -2.41
NUP98P52948 AC073349.3-201ENST00000617616 186 ntBASIC0.02□□□□□ -2.41
NUP98P52948 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.02□□□□□ -2.41
NUP98P52948 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.02□□□□□ -2.41
NUP98P52948 RNU4-92P-201ENST00000363783 136 ntBASIC0.01□□□□□ -2.41
NUP98P52948 RNU6-393P-201ENST00000384475 107 ntBASIC0.01□□□□□ -2.41
NUP98P52948 CALM2P3-201ENST00000400429 449 ntBASIC0.01□□□□□ -2.41
NUP98P52948 MIR320B2-201ENST00000408479 138 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC004386.2-201ENST00000441858 148 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC016550.1-201ENST00000505348 785 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC010493.1-201ENST00000513479 292 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC090572.1-201ENST00000519251 160 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AF235103.2-201ENST00000525753 346 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.01□□□□□ -2.41
NUP98P52948 ZNF519P3-201ENST00000557158 1032 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.01□□□□□ -2.41
NUP98P52948 MIR4768-201ENST00000585270 74 ntBASIC0.01□□□□□ -2.41
NUP98P52948 LARP7P1-201ENST00000605576 316 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC240442.1-201ENST00000616055 283 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AL049777.1-201ENST00000622740 518 ntBASIC0.01□□□□□ -2.41
NUP98P52948 RNU4-73P-201ENST00000363164 141 ntBASIC0.01□□□□□ -2.41
NUP98P52948 RNU5E-10P-201ENST00000363506 118 ntBASIC0.01□□□□□ -2.41
NUP98P52948 RNU4-45P-201ENST00000365469 141 ntBASIC0.01□□□□□ -2.41
NUP98P52948 RNU6-1200P-201ENST00000384162 107 ntBASIC0.01□□□□□ -2.41
NUP98P52948 RNU6-809P-201ENST00000384461 107 ntBASIC0.01□□□□□ -2.41
NUP98P52948 SNORD41-201ENST00000386967 70 ntBASIC0.01□□□□□ -2.41
NUP98P52948 RPS3AP3-201ENST00000411933 242 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.01□□□□□ -2.41
NUP98P52948 MTCO2P23-201ENST00000425216 680 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.01□□□□□ -2.41
NUP98P52948 MTCO3P8-201ENST00000453691 755 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC007215.1-201ENST00000464893 276 ntBASIC0.01□□□□□ -2.41
NUP98P52948 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.01□□□□□ -2.41
NUP98P52948 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.01□□□□□ -2.41
NUP98P52948 AC069113.1-201ENST00000517763 267 ntBASIC0.01□□□□□ -2.41
NUP98P52948 DEFB131C-201ENST00000528817 165 ntBASIC0.01□□□□□ -2.41
NUP98P52948 AC122133.1-201ENST00000613964 233 ntBASIC0.01□□□□□ -2.41
NUP98P52948 SNORA43.4-201ENST00000629559 138 ntBASIC0.01□□□□□ -2.41
NUP98P52948 Y_RNA.18-201ENST00000362461 102 ntBASIC0□□□□□ -2.41
NUP98P52948 Y_RNA.22-201ENST00000362492 102 ntBASIC0□□□□□ -2.41
NUP98P52948 RNU6-923P-201ENST00000364753 107 ntBASIC0□□□□□ -2.41
NUP98P52948 SNORD115-7-201ENST00000365306 82 ntBASIC0□□□□□ -2.41
NUP98P52948 MIR562-201ENST00000384894 95 ntBASIC0□□□□□ -2.41
NUP98P52948 MIR1-2-201ENST00000384961 85 ntBASIC0□□□□□ -2.41
NUP98P52948 MIR140-201ENST00000385282 100 ntBASIC0□□□□□ -2.41
NUP98P52948 RNA5SP219-201ENST00000390940 113 ntBASIC0□□□□□ -2.41
NUP98P52948 RNU6-1000P-201ENST00000391066 106 ntBASIC0□□□□□ -2.41
NUP98P52948 RNU6-757P-201ENST00000410334 100 ntBASIC0□□□□□ -2.41
NUP98P52948 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0□□□□□ -2.41
NUP98P52948 AC093850.1-201ENST00000454121 251 ntBASIC0□□□□□ -2.41
NUP98P52948 snoU13.19-201ENST00000459148 104 ntBASIC0□□□□□ -2.41
NUP98P52948 AC091874.1-201ENST00000511402 339 ntBASIC0□□□□□ -2.41
NUP98P52948 SNORA25.12-201ENST00000516202 82 ntBASIC0□□□□□ -2.41
NUP98P52948 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0□□□□□ -2.41
NUP98P52948 AC022523.2-201ENST00000561045 150 ntBASIC0□□□□□ -2.41
NUP98P52948 AC026470.2-201ENST00000561492 181 ntBASIC0□□□□□ -2.41
NUP98P52948 MIR4778-201ENST00000577635 80 ntBASIC0□□□□□ -2.41
NUP98P52948 AC005562.2-201ENST00000618264 111 ntBASIC0□□□□□ -2.41
NUP98P52948 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms