| HPRT1 | P00492 | SNORD3E-202 | ENST00000627253 | 216 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | EYS-205 | ENST00000393380 | 5450 nt | TSL 1 (best) BASIC | 0.85 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | MIR378A-201 | ENST00000362177 | 66 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | RNU6-254P-201 | ENST00000363377 | 107 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | RNU6-873P-201 | ENST00000363833 | 107 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | SNORD115-8-201 | ENST00000363856 | 82 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | RNU4-9P-201 | ENST00000364951 | 139 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | SNORD115-38-201 | ENST00000365037 | 82 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | Y_RNA.319-201 | ENST00000365138 | 92 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | Y_RNA.372-201 | ENST00000365599 | 102 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | RNU6-1119P-201 | ENST00000384349 | 108 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | RNU6-482P-201 | ENST00000391068 | 107 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | MIR1185-2-201 | ENST00000408687 | 86 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | RNU6-1068P-201 | ENST00000410958 | 103 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | AC108667.1-201 | ENST00000428618 | 249 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | SNORA70.22-201 | ENST00000517160 | 124 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | AK6P2-201 | ENST00000549020 | 471 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | AC026462.3-202 | ENST00000564361 | 515 nt | TSL 3 BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | AL158211.1-201 | ENST00000566763 | 763 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | FRG2DP-202 | ENST00000566967 | 323 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | MIR3611-201 | ENST00000584484 | 83 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | AC022432.1-201 | ENST00000595739 | 310 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | SNORD114-21-201 | ENST00000606412 | 72 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | RN7SKP299-201 | ENST00000606679 | 301 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | U6.73-201 | ENST00000619194 | 103 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| HPRT1 | P00492 | MTND5P26-201 | ENST00000426018 | 1752 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | C9orf84-204 | ENST00000394777 | 4955 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-1266P-201 | ENST00000362794 | 105 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-1252P-201 | ENST00000363054 | 104 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | U3.8-201 | ENST00000363675 | 217 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | SNORD115-32-201 | ENST00000364079 | 82 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | Y_RNA.373-201 | ENST00000365600 | 103 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-128P-201 | ENST00000383976 | 107 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | Y_RNA.415-201 | ENST00000384012 | 112 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AL034345.1-201 | ENST00000407768 | 123 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC121342.1-201 | ENST00000423914 | 550 nt | TSL 3 BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RAB28P5-201 | ENST00000427490 | 651 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | ERLEC1P1-201 | ENST00000433806 | 578 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | PCMTD1P1-201 | ENST00000455560 | 355 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | CFLAR-AS1-202 | ENST00000474886 | 223 nt | TSL 3 BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC087343.1-201 | ENST00000477341 | 475 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | MTCO2P30-201 | ENST00000503662 | 364 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | LINC02491-201 | ENST00000504710 | 403 nt | TSL 2 BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC010486.3-201 | ENST00000511602 | 785 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | SNORA31.2-201 | ENST00000516019 | 134 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-1198P-201 | ENST00000516904 | 67 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC009930.1-201 | ENST00000522330 | 191 nt | TSL 5 BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC027288.2-201 | ENST00000553028 | 243 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC004584.2-201 | ENST00000570407 | 410 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC073349.3-201 | ENST00000617616 | 186 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AL513423.1-201 | ENST00000621695 | 132 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | MTND4P12-201 | ENST00000498999 | 1377 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | CEP162-202 | ENST00000403245 | 5156 nt | APPRIS P1 TSL 5 BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | ZGRF1-202 | ENST00000309071 | 3347 nt | TSL 1 (best) BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-1042P-201 | ENST00000384204 | 107 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-541P-201 | ENST00000384709 | 110 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | MIR153-2-201 | ENST00000385225 | 87 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-910P-201 | ENST00000390844 | 107 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | MTCO3P40-201 | ENST00000392516 | 676 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | CALM2P3-201 | ENST00000400429 | 449 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RPL30P16-201 | ENST00000419341 | 429 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AP000235.1-201 | ENST00000424017 | 479 nt | TSL 3 BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AL590632.1-201 | ENST00000424289 | 371 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | NDUFA5P4-201 | ENST00000436704 | 385 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC048334.1-201 | ENST00000477975 | 159 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC027343.1-201 | ENST00000504765 | 407 nt | TSL 4 BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC096736.2-201 | ENST00000507972 | 175 nt | TSL 3 BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU7-99P-201 | ENST00000516271 | 62 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AP003128.1-201 | ENST00000531414 | 448 nt | TSL 2 BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC087260.1-201 | ENST00000546118 | 401 nt | TSL 5 BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC096558.1-203 | ENST00000550516 | 574 nt | TSL 3 BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | ZNF519P2-201 | ENST00000557032 | 169 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | MIR4778-201 | ENST00000577635 | 80 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | POLR3GP2-201 | ENST00000588366 | 668 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AL133216.2-202 | ENST00000634512 | 349 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC099654.12-201 | ENST00000639868 | 649 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AL391987.6-201 | ENST00000305671 | 199 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU4-76P-201 | ENST00000364509 | 141 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-95P-201 | ENST00000384697 | 107 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | MIR660-201 | ENST00000385235 | 97 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AP1B1P2-201 | ENST00000416196 | 106 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC025918.1-201 | ENST00000452467 | 383 nt | TSL 3 BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | NDUFB4P10-201 | ENST00000452541 | 359 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RPL39P28-201 | ENST00000465655 | 155 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | NMTRQ-TTG12-1-201 | ENST00000467595 | 72 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | UBL5P1-201 | ENST00000507979 | 193 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | Y_RNA.693-201 | ENST00000516641 | 110 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC027419.1-201 | ENST00000522976 | 328 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC068205.1-204 | ENST00000532989 | 481 nt | TSL 3 BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | UBL5P4-201 | ENST00000562584 | 236 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | PNRC2-204 | ENST00000579103 | 171 nt | TSL 2 BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | MIR4298-201 | ENST00000584380 | 73 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC010525.2-201 | ENST00000590920 | 195 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AL513534.2-201 | ENST00000603836 | 250 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AC068137.3-201 | ENST00000639191 | 341 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | NPAT-201 | ENST00000278612 | 6117 nt | APPRIS P2 TSL 1 (best) BASIC | 0.8 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | AP000568.1-201 | ENST00000282964 | 442 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU4-38P-201 | ENST00000364472 | 129 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6-259P-201 | ENST00000383999 | 107 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| HPRT1 | P00492 | RNU6ATAC8P-201 | ENST00000408460 | 126 nt | BASIC | 0.8 | □□□□□ -2.28 | | |