Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXA3O43365 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA3O43365 AC068647.1-201ENST00000489539 2265 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA3O43365 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXA3O43365 Y_RNA.8-201ENST00000362353 102 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 SNORD114-7-201ENST00000362520 77 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 RNU1-35P-201ENST00000362782 153 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 Y_RNA.111-201ENST00000363248 100 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 Y_RNA.124-201ENST00000363339 93 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 Y_RNA.172-201ENST00000363765 102 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 Y_RNA.293-201ENST00000364908 93 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 RNU4-17P-201ENST00000365598 141 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 RNU6-418P-201ENST00000384035 107 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 RNU6-57P-201ENST00000411348 103 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 AL121890.1-201ENST00000435457 205 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXA3O43365 AL161788.1-201ENST00000441805 169 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXA3O43365 HMGN2P18-201ENST00000450680 270 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 RPS4XP2-201ENST00000458402 793 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 AC080013.2-201ENST00000460866 323 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXA3O43365 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXA3O43365 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXA3O43365 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA3O43365 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA3O43365 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXA3O43365 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
HOXA3O43365 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXA3O43365 AC110774.1-201ENST00000623567 2018 ntBASIC2.68□□□□□ -1.98
HOXA3O43365 AL356274.2-201ENST00000624379 3752 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA3O43365 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
HOXA3O43365 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA3O43365 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.67□□□□□ -1.98
HOXA3O43365 AL157777.2-201ENST00000258070 137 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 Y_RNA.121-201ENST00000363309 113 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 RNU4-10P-201ENST00000364383 140 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 RNU6-438P-201ENST00000365561 103 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 RNU6-805P-201ENST00000365643 106 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 SNORD21-201ENST00000383953 95 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 RNU6-546P-201ENST00000383991 107 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 MIR626-201ENST00000385032 94 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 MIR873-201ENST00000401120 77 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 RNU2-32P-201ENST00000411193 191 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 AL357552.1-201ENST00000445254 415 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 AC016925.1-201ENST00000458303 298 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 RNU7-141P-201ENST00000459304 62 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 RPS27P29-201ENST00000463110 252 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 AC010401.1-201ENST00000463867 348 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 AC023141.11-201ENST00000508864 202 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 AC010598.1-201ENST00000510378 103 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXA3O43365 SNORA70.19-201ENST00000516717 90 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 MTND5P41-201ENST00000517498 206 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 MIR5004-201ENST00000579078 107 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 MIR4325-201ENST00000583049 90 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA3O43365 AL513302.2-201ENST00000562313 1842 ntBASIC2.67□□□□□ -1.98
HOXA3O43365 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.67□□□□□ -1.98
HOXA3O43365 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXA3O43365 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
HOXA3O43365 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
HOXA3O43365 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXA3O43365 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXA3O43365 Y_RNA.182-201ENST00000363880 111 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 RNU6-312P-201ENST00000364629 107 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 RNU6-283P-201ENST00000364788 107 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 SNORA8.3-201ENST00000384679 139 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 RNU6-381P-201ENST00000391259 108 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 FO393413.1-201ENST00000402892 195 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 AL355497.1-201ENST00000406262 551 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 RPL23AP7-203ENST00000449021 469 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 CENPBD1P1-201ENST00000464061 469 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 RPL23AP67-201ENST00000465341 474 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 CKS1BP2-201ENST00000497342 240 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 RNU7-200P-201ENST00000516105 62 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXA3O43365 AC022616.8-201ENST00000533569 253 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 MIR3910-1-201ENST00000580936 111 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 AC108706.1-201ENST00000611053 297 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 SCARNA15.3-201ENST00000626315 122 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 SCARNA4.1-201ENST00000628597 123 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.66□□□□□ -1.98
HOXA3O43365 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HOXA3O43365 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
HOXA3O43365 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC2.65□□□□□ -1.98
HOXA3O43365 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.98
HOXA3O43365 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.65□□□□□ -1.98
HOXA3O43365 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
HOXA3O43365 Y_RNA.24-201ENST00000362508 103 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 SNORA27.1-201ENST00000362604 124 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA3O43365 Y_RNA.398-201ENST00000383952 99 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 MIR95-201ENST00000385072 81 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 RNU4-47P-201ENST00000410876 114 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 RNU5E-9P-201ENST00000411164 104 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 AC009969.1-201ENST00000438726 172 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 223.4 ms