Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC006971.1-201ENST00000407916 4486 ntBASIC6.63□□□□□ -1.35
MSH5O43196 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSH5O43196 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC6.63□□□□□ -1.35
MSH5O43196 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSH5O43196 RNA5SP191-201ENST00000362585 102 ntBASIC6.63□□□□□ -1.35
MSH5O43196 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.63□□□□□ -1.35
MSH5O43196 SNRPGP12-201ENST00000449481 213 ntBASIC6.63□□□□□ -1.35
MSH5O43196 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSH5O43196 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC6.63□□□□□ -1.35
MSH5O43196 RNU6-850P-201ENST00000516934 103 ntBASIC6.63□□□□□ -1.35
MSH5O43196 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSH5O43196 AL357312.1-201ENST00000603879 298 ntBASIC6.63□□□□□ -1.35
MSH5O43196 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC6.63□□□□□ -1.35
MSH5O43196 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSH5O43196 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
MSH5O43196 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSH5O43196 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSH5O43196 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
MSH5O43196 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSH5O43196 RNU6-1274P-201ENST00000384557 107 ntBASIC6.62□□□□□ -1.35
MSH5O43196 MIR1182-201ENST00000408363 97 ntBASIC6.62□□□□□ -1.35
MSH5O43196 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.62□□□□□ -1.35
MSH5O43196 RN7SL319P-201ENST00000480656 221 ntBASIC6.62□□□□□ -1.35
MSH5O43196 RNU1-142P-201ENST00000516682 145 ntBASIC6.62□□□□□ -1.35
MSH5O43196 AC090897.1-201ENST00000580909 226 ntBASIC6.62□□□□□ -1.35
MSH5O43196 MIR5096-201ENST00000583713 70 ntBASIC6.62□□□□□ -1.35
MSH5O43196 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.62□□□□□ -1.35
MSH5O43196 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
MSH5O43196 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
MSH5O43196 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSH5O43196 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.61□□□□□ -1.35
MSH5O43196 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
MSH5O43196 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
MSH5O43196 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
MSH5O43196 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSH5O43196 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSH5O43196 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSH5O43196 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSH5O43196 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
MSH5O43196 RNU1-146P-201ENST00000364015 165 ntBASIC6.61□□□□□ -1.35
MSH5O43196 MIR1193-201ENST00000408109 78 ntBASIC6.61□□□□□ -1.35
MSH5O43196 RNA5SP296-201ENST00000410523 111 ntBASIC6.61□□□□□ -1.35
MSH5O43196 HMGN1P33-201ENST00000432945 451 ntBASIC6.61□□□□□ -1.35
MSH5O43196 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6.61□□□□□ -1.35
MSH5O43196 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC6.61□□□□□ -1.35
MSH5O43196 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.61□□□□□ -1.35
MSH5O43196 CTSLP2-204ENST00000629029 392 ntBASIC6.61□□□□□ -1.35
MSH5O43196 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSH5O43196 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
MSH5O43196 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC6.61□□□□□ -1.35
MSH5O43196 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSH5O43196 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
MSH5O43196 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSH5O43196 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC6.6□□□□□ -1.35
MSH5O43196 SNORA38-201ENST00000363946 132 ntBASIC6.6□□□□□ -1.35
MSH5O43196 HMGN2P8-201ENST00000391458 268 ntBASIC6.6□□□□□ -1.35
MSH5O43196 AC026402.1-201ENST00000513642 170 ntBASIC6.6□□□□□ -1.35
MSH5O43196 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC6.6□□□□□ -1.35
MSH5O43196 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSH5O43196 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSH5O43196 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSH5O43196 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
MSH5O43196 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSH5O43196 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSH5O43196 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.35
MSH5O43196 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC6.59□□□□□ -1.35
MSH5O43196 Y_RNA.510-201ENST00000384511 114 ntBASIC6.59□□□□□ -1.35
MSH5O43196 RNU1-101P-201ENST00000391171 127 ntBASIC6.59□□□□□ -1.35
MSH5O43196 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.59□□□□□ -1.35
MSH5O43196 AC019176.1-201ENST00000518519 225 ntBASIC6.59□□□□□ -1.35
MSH5O43196 MIR4277-201ENST00000578298 84 ntBASIC6.59□□□□□ -1.35
MSH5O43196 RN7SL176P-201ENST00000580352 264 ntBASIC6.59□□□□□ -1.35
MSH5O43196 AC244107.2-201ENST00000611773 76 ntBASIC6.59□□□□□ -1.35
MSH5O43196 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
MSH5O43196 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSH5O43196 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSH5O43196 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
MSH5O43196 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSH5O43196 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSH5O43196 RNA5SP90-201ENST00000364801 99 ntBASIC6.58□□□□□ -1.36
MSH5O43196 Y_RNA.370-201ENST00000365589 108 ntBASIC6.58□□□□□ -1.36
MSH5O43196 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.58□□□□□ -1.36
MSH5O43196 MIR4458-201ENST00000578872 75 ntBASIC6.58□□□□□ -1.36
MSH5O43196 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC6.58□□□□□ -1.36
MSH5O43196 MIR8069-1-201ENST00000616627 86 ntBASIC6.58□□□□□ -1.36
MSH5O43196 MIR8069-2-201ENST00000621412 86 ntBASIC6.58□□□□□ -1.36
MSH5O43196 AC007656.2-201ENST00000624902 4547 ntBASIC6.58□□□□□ -1.36
MSH5O43196 PTER-201ENST00000298942 3448 ntTSL 5 BASIC6.58□□□□□ -1.36
MSH5O43196 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC6.57□□□□□ -1.36
MSH5O43196 RNU6-1051P-201ENST00000365471 102 ntBASIC6.57□□□□□ -1.36
MSH5O43196 MIR518E-201ENST00000385252 88 ntBASIC6.57□□□□□ -1.36
MSH5O43196 AC015922.2-201ENST00000435593 184 ntBASIC6.57□□□□□ -1.36
MSH5O43196 MIR6830-201ENST00000636015 70 ntBASIC6.57□□□□□ -1.36
MSH5O43196 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH5O43196 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH5O43196 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.56□□□□□ -1.36
MSH5O43196 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSH5O43196 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSH5O43196 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
MSH5O43196 SNORA1.2-201ENST00000365189 134 ntBASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 437.3 ms