Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF38Q9H0F5 AC007952.6-201ENST00000573168 2673 ntBASIC19.62■□□□□ 0.73
RNF38Q9H0F5 AC003957.1-201ENST00000625108 2673 ntBASIC19.62■□□□□ 0.73
RNF38Q9H0F5 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF38Q9H0F5 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF38Q9H0F5 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF38Q9H0F5 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF38Q9H0F5 AC036111.1-201ENST00000533973 1582 ntBASIC19.61■□□□□ 0.73
RNF38Q9H0F5 AC093484.2-201ENST00000580996 2166 ntBASIC19.61■□□□□ 0.73
RNF38Q9H0F5 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 IRX1P1-201ENST00000438849 1838 ntBASIC19.61■□□□□ 0.73
RNF38Q9H0F5 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 FAM86EP-206ENST00000510506 987 ntBASIC19.61■□□□□ 0.73
RNF38Q9H0F5 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF38Q9H0F5 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 AL671277.2-201ENST00000458060 996 ntBASIC19.6■□□□□ 0.73
RNF38Q9H0F5 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.6■□□□□ 0.73
RNF38Q9H0F5 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF38Q9H0F5 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 STARP1-201ENST00000397973 869 ntBASIC19.59■□□□□ 0.73
RNF38Q9H0F5 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 MCCD1P1-208ENST00000445732 328 ntBASIC19.59■□□□□ 0.73
RNF38Q9H0F5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 HYMAI.1-201ENST00000620949 238 ntBASIC19.59■□□□□ 0.73
RNF38Q9H0F5 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 AC141586.3-201ENST00000562166 1838 ntBASIC19.59■□□□□ 0.73
RNF38Q9H0F5 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF38Q9H0F5 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
RNF38Q9H0F5 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.58■□□□□ 0.73
RNF38Q9H0F5 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
RNF38Q9H0F5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms