Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 AC093512.1-201ENST00000617969 520 ntBASIC19.24■□□□□ 0.67
TTC28Q96AY4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TTC28Q96AY4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TTC28Q96AY4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TTC28Q96AY4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TTC28Q96AY4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 AC007967.2-201ENST00000432613 625 ntBASIC19.23■□□□□ 0.67
TTC28Q96AY4 GAPDHP21-201ENST00000450301 1010 ntBASIC19.23■□□□□ 0.67
TTC28Q96AY4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 AC027612.4-201ENST00000605371 583 ntBASIC19.23■□□□□ 0.67
TTC28Q96AY4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TTC28Q96AY4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TTC28Q96AY4 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
TTC28Q96AY4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.23■□□□□ 0.67
TTC28Q96AY4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.23■□□□□ 0.67
TTC28Q96AY4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TTC28Q96AY4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 UNC93B6-202ENST00000528242 690 ntBASIC19.22■□□□□ 0.67
TTC28Q96AY4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AC011840.4-201ENST00000578471 627 ntBASIC19.22■□□□□ 0.67
TTC28Q96AY4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.22■□□□□ 0.67
TTC28Q96AY4 AL078644.1-201ENST00000609881 752 ntBASIC19.22■□□□□ 0.67
TTC28Q96AY4 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TTC28Q96AY4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.21■□□□□ 0.67
TTC28Q96AY4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.21■□□□□ 0.67
TTC28Q96AY4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.21■□□□□ 0.67
TTC28Q96AY4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 AL023284.2-201ENST00000405850 579 ntBASIC19.21■□□□□ 0.67
TTC28Q96AY4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 PRSS29P-201ENST00000440800 595 ntBASIC19.21■□□□□ 0.67
TTC28Q96AY4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.21■□□□□ 0.67
TTC28Q96AY4 Z92544.3-201ENST00000624747 417 ntBASIC19.21■□□□□ 0.67
TTC28Q96AY4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TTC28Q96AY4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 SIGLEC30P-201ENST00000455569 941 ntBASIC19.2■□□□□ 0.66
TTC28Q96AY4 AC005829.1-201ENST00000570002 483 ntBASIC19.2■□□□□ 0.66
TTC28Q96AY4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.2■□□□□ 0.66
TTC28Q96AY4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
TTC28Q96AY4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TTC28Q96AY4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TTC28Q96AY4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.2■□□□□ 0.66
TTC28Q96AY4 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TTC28Q96AY4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TTC28Q96AY4 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TTC28Q96AY4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms