Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SYNE1Q8NF91 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 PTPA-216ENST00000432651 857 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AC005332.1-201ENST00000577698 1310 ntBASIC5.83□□□□□ -1.48
SYNE1Q8NF91 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 SLC25A1P2-201ENST00000430693 912 ntBASIC5.83□□□□□ -1.48
SYNE1Q8NF91 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AC097488.1-201ENST00000507834 756 ntBASIC5.83□□□□□ -1.48
SYNE1Q8NF91 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 COPE-203ENST00000351079 907 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 FAM207BP-201ENST00000447172 505 ntBASIC5.83□□□□□ -1.48
SYNE1Q8NF91 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 AL691432.2-201ENST00000607222 2038 ntBASIC5.83□□□□□ -1.48
SYNE1Q8NF91 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SYNE1Q8NF91 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms