Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 AC117500.6-201ENST00000624871 588 ntBASIC18.17■□□□□ 0.5
COL28A1Q2UY09 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL28A1Q2UY09 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 AL671883.3-201ENST00000603274 991 ntBASIC18.16■□□□□ 0.5
COL28A1Q2UY09 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL28A1Q2UY09 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.15■□□□□ 0.5
COL28A1Q2UY09 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 STARP1-201ENST00000397973 869 ntBASIC18.15■□□□□ 0.5
COL28A1Q2UY09 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 AC079781.3-201ENST00000449110 356 ntBASIC18.15■□□□□ 0.5
COL28A1Q2UY09 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 TCF3P1-201ENST00000423021 1937 ntBASIC18.15■□□□□ 0.5
COL28A1Q2UY09 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL28A1Q2UY09 AL691432.2-201ENST00000607222 2038 ntBASIC18.15■□□□□ 0.5
COL28A1Q2UY09 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL28A1Q2UY09 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms