Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
USF1P22415 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
USF1P22415 AC090340.1-201ENST00000620778 4980 ntBASIC16.03■□□□□ 0.16
USF1P22415 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.02■□□□□ 0.16
USF1P22415 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.02■□□□□ 0.16
USF1P22415 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.02■□□□□ 0.16
USF1P22415 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.02■□□□□ 0.16
USF1P22415 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.02■□□□□ 0.16
USF1P22415 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.02■□□□□ 0.16
USF1P22415 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.02■□□□□ 0.16
USF1P22415 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
USF1P22415 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.02■□□□□ 0.16
USF1P22415 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.02■□□□□ 0.16
USF1P22415 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.02■□□□□ 0.16
USF1P22415 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.02■□□□□ 0.16
USF1P22415 AL121956.5-201ENST00000625261 221 ntBASIC16.02■□□□□ 0.16
USF1P22415 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
USF1P22415 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
USF1P22415 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
USF1P22415 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
USF1P22415 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
USF1P22415 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.02■□□□□ 0.15
USF1P22415 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
USF1P22415 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
USF1P22415 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
USF1P22415 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
USF1P22415 LINC01465-201ENST00000408887 1940 ntBASIC16.02■□□□□ 0.15
USF1P22415 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
USF1P22415 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
USF1P22415 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.01■□□□□ 0.15
USF1P22415 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.01■□□□□ 0.15
USF1P22415 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
USF1P22415 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.01■□□□□ 0.15
USF1P22415 AP003041.3-201ENST00000527151 707 ntBASIC16.01■□□□□ 0.15
USF1P22415 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.01■□□□□ 0.15
USF1P22415 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
USF1P22415 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.01■□□□□ 0.15
USF1P22415 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
USF1P22415 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.01■□□□□ 0.15
USF1P22415 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
USF1P22415 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16■□□□□ 0.15
USF1P22415 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16■□□□□ 0.15
USF1P22415 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
USF1P22415 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
USF1P22415 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16■□□□□ 0.15
USF1P22415 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16■□□□□ 0.15
USF1P22415 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
USF1P22415 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
USF1P22415 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16■□□□□ 0.15
USF1P22415 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms