Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AP002001.1-203ENST00000534002 267 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 MIR4325-201ENST00000583049 90 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 MIR22-201ENST00000362190 85 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.44-201ENST00000362676 108 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 RNU1-23P-201ENST00000363361 144 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.136-201ENST00000363444 102 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 SNORA71.1-201ENST00000364523 117 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.257-201ENST00000364596 102 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 RNU6-1180P-201ENST00000364935 107 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 MIR483-201ENST00000385070 76 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 SNORD67-201ENST00000390833 111 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 SNORA48.5-201ENST00000391143 135 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 AL603910.2-201ENST00000407268 136 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 RPL23AP3-201ENST00000453844 468 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 AC016925.1-201ENST00000458303 298 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 ATP5EP1-201ENST00000510257 156 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 RNA5SP341-201ENST00000516261 117 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 RNU6-948P-201ENST00000516374 107 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.680-201ENST00000516441 93 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 RNU2-12P-201ENST00000517216 168 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 AL512605.2-201ENST00000592972 256 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 AL162274.2-201ENST00000614406 332 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 AC141273.2-201ENST00000618989 130 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 MIR1248-201ENST00000629190 106 ntBASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.03□□□□□ -1.92
TRIM39Q9HCM9 RNU6-743P-201ENST00000364151 106 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 RNU6-975P-201ENST00000384296 105 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 MIR1185-2-201ENST00000408687 86 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 RPL19P1-201ENST00000411635 428 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 HMGN2P18-201ENST00000450680 270 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 S100A11P2-201ENST00000467589 312 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 RNU2-34P-201ENST00000516534 121 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 AC091953.5-201ENST00000622919 233 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 snoZ196.1-201ENST00000625269 89 ntBASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
TRIM39Q9HCM9 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 AC135776.4-201ENST00000624300 1904 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 RNA5SP125-201ENST00000364843 120 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 SNORA54-201ENST00000384281 123 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 SNORA48.2-201ENST00000390926 124 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 MRPS10P1-201ENST00000448483 130 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 AL137159.1-201ENST00000452808 512 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 MTND1P19-201ENST00000511780 315 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 U4atac.1-201ENST00000618345 95 ntBASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
TRIM39Q9HCM9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3□□□□□ -1.93
TRIM39Q9HCM9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3□□□□□ -1.93
TRIM39Q9HCM9 RNU6-454P-201ENST00000364292 107 ntBASIC3□□□□□ -1.93
TRIM39Q9HCM9 U3.40-201ENST00000408706 208 ntBASIC3□□□□□ -1.93
TRIM39Q9HCM9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC3□□□□□ -1.93
TRIM39Q9HCM9 RN7SKP40-201ENST00000517211 242 ntBASIC3□□□□□ -1.93
TRIM39Q9HCM9 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3□□□□□ -1.93
TRIM39Q9HCM9 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3□□□□□ -1.93
TRIM39Q9HCM9 AC090616.3-201ENST00000582184 217 ntBASIC3□□□□□ -1.93
TRIM39Q9HCM9 AC078938.1-201ENST00000620993 318 ntBASIC3□□□□□ -1.93
TRIM39Q9HCM9 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3□□□□□ -1.93
TRIM39Q9HCM9 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3□□□□□ -1.93
TRIM39Q9HCM9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
TRIM39Q9HCM9 AC093831.2-201ENST00000624393 3427 ntBASIC3□□□□□ -1.93
TRIM39Q9HCM9 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
TRIM39Q9HCM9 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3□□□□□ -1.93
TRIM39Q9HCM9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3□□□□□ -1.93
TRIM39Q9HCM9 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 U8.9-201ENST00000365667 134 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 RNU6-1199P-201ENST00000411249 104 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 AC008134.1-201ENST00000420943 193 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 MTCO1P5-201ENST00000433573 344 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 RN7SL20P-201ENST00000488827 297 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 SNORA70.12-201ENST00000516084 153 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 RNU4-71P-201ENST00000516258 113 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 AC005000.2-201ENST00000605468 310 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 AC108206.1-201ENST00000570186 4159 ntBASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
TRIM39Q9HCM9 Y_RNA.277-201ENST00000364754 102 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 Y_RNA.418-201ENST00000384029 102 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 RNU6-1235P-201ENST00000384559 107 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 MIR128-1-201ENST00000384921 82 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 RNU6-710P-201ENST00000410424 105 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms