Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RNU6-1045P-201ENST00000516321 107 ntBASIC2.47□□□□□ -2.01
PAAF1Q9BRP4 MIR4659A-201ENST00000580269 81 ntBASIC2.47□□□□□ -2.01
PAAF1Q9BRP4 MIR5007-201ENST00000583098 95 ntBASIC2.47□□□□□ -2.01
PAAF1Q9BRP4 AC104984.5-201ENST00000586878 94 ntBASIC2.47□□□□□ -2.01
PAAF1Q9BRP4 AL121655.1-201ENST00000605811 308 ntBASIC2.47□□□□□ -2.01
PAAF1Q9BRP4 Y_RNA.772-201ENST00000606692 102 ntBASIC2.47□□□□□ -2.01
PAAF1Q9BRP4 AC011476.5-201ENST00000615594 130 ntBASIC2.47□□□□□ -2.01
PAAF1Q9BRP4 AC135776.4-201ENST00000624300 1904 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 RNU6-545P-201ENST00000362681 104 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 Y_RNA.380-201ENST00000365663 111 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 Y_RNA.498-201ENST00000384460 102 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 MIR1252-201ENST00000408861 65 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 RN7SKP192-201ENST00000411291 327 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 AC004866.1-201ENST00000411748 78 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 AL135786.1-201ENST00000415892 214 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 AC074290.1-201ENST00000448883 135 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 HMGN2P18-201ENST00000450680 270 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 RNU6-991P-201ENST00000516168 107 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 RNU6-397P-201ENST00000516226 104 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 MIR1273D-201ENST00000577266 86 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 AC113195.1-201ENST00000579952 141 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 AL078596.1-201ENST00000624856 447 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 AC068205.3-201ENST00000636385 468 ntBASIC2.46□□□□□ -2.02
PAAF1Q9BRP4 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 SNORD87-201ENST00000364849 89 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 RNU1-51P-201ENST00000365345 176 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 Y_RNA.415-201ENST00000384012 112 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 RNU6-1072P-201ENST00000384703 107 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 RNU6-443P-201ENST00000384780 107 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 MIR300-201ENST00000401138 83 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 snoU13.15-201ENST00000459407 104 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 AC114982.1-201ENST00000469402 321 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 ATP5EP1-201ENST00000510257 156 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 SNORA40.9-201ENST00000515895 93 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 RNU6-408P-201ENST00000515910 100 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 SNORA4.4-201ENST00000515921 135 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 RNU6-1012P-201ENST00000516606 109 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 Y_RNA.713-201ENST00000517013 96 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 AC034114.1-201ENST00000520293 285 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 AC025754.2-201ENST00000606491 432 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 AC240442.1-201ENST00000616055 283 ntBASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.45□□□□□ -2.02
PAAF1Q9BRP4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 SNORD31B-201ENST00000364977 69 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 Y_RNA.439-201ENST00000384119 94 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 Y_RNA.458-201ENST00000384240 102 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 RNU6-611P-201ENST00000384276 104 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 MIR221-201ENST00000385135 110 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 AL079342.1-201ENST00000401460 267 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 MIR1283-1-201ENST00000408494 87 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 RPS12P2-201ENST00000439728 269 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 RNU6-625P-201ENST00000459412 107 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 snoU13.26-201ENST00000459452 105 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 SNORA40.15-201ENST00000516884 107 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 AC131281.1-201ENST00000522984 164 ntBASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PAAF1Q9BRP4 Y_RNA.210-201ENST00000364161 110 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 MTND5P22-201ENST00000458380 195 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 RN7SL499P-201ENST00000481141 276 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 AC018868.1-201ENST00000491307 315 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 AC074133.1-201ENST00000515696 183 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 MIR3126-201ENST00000577443 74 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 MIR4658-201ENST00000584344 65 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 AL355297.3-201ENST00000604082 446 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 AL357075.2-201ENST00000614906 189 ntBASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
PAAF1Q9BRP4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
PAAF1Q9BRP4 SNORA72.2-201ENST00000365028 127 ntBASIC2.42□□□□□ -2.02
PAAF1Q9BRP4 SNORA64-201ENST00000384674 134 ntBASIC2.42□□□□□ -2.02
PAAF1Q9BRP4 MIR586-201ENST00000385035 97 ntBASIC2.42□□□□□ -2.02
PAAF1Q9BRP4 AL023284.1-201ENST00000403956 276 ntBASIC2.42□□□□□ -2.02
PAAF1Q9BRP4 MRPL35P1-201ENST00000404272 572 ntBASIC2.42□□□□□ -2.02
PAAF1Q9BRP4 RNA5SP475-201ENST00000410568 110 ntBASIC2.42□□□□□ -2.02
PAAF1Q9BRP4 RPEP5-201ENST00000441137 268 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms