Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 YWHAEP4-201ENST00000505390 198 ntBASIC3.64□□□□□ -1.83
USP48Q86UV5 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.64□□□□□ -1.83
USP48Q86UV5 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.64□□□□□ -1.83
USP48Q86UV5 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.64□□□□□ -1.83
USP48Q86UV5 MIR3199-1-201ENST00000582434 88 ntBASIC3.64□□□□□ -1.83
USP48Q86UV5 AC009487.2-201ENST00000420969 6821 ntBASIC3.64□□□□□ -1.83
USP48Q86UV5 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.64□□□□□ -1.83
USP48Q86UV5 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.64□□□□□ -1.83
USP48Q86UV5 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
USP48Q86UV5 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.63□□□□□ -1.83
USP48Q86UV5 Y_RNA.44-201ENST00000362676 108 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 Y_RNA.122-201ENST00000363331 96 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 RNU6-682P-201ENST00000363843 106 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 Y_RNA.415-201ENST00000384012 112 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 MIR218-1-201ENST00000384999 110 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 RPL23AP36-201ENST00000413895 458 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.63□□□□□ -1.83
USP48Q86UV5 EEF1B2P7-201ENST00000451177 676 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.63□□□□□ -1.83
USP48Q86UV5 SNORD116-28-201ENST00000516123 91 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.63□□□□□ -1.83
USP48Q86UV5 AC105245.1-201ENST00000581934 244 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.63□□□□□ -1.83
USP48Q86UV5 AL713866.2-201ENST00000603579 219 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 AC037487.3-201ENST00000606668 112 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 AC068205.3-201ENST00000636385 468 ntBASIC3.63□□□□□ -1.83
USP48Q86UV5 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USP48Q86UV5 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.62□□□□□ -1.83
USP48Q86UV5 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
USP48Q86UV5 AC135776.4-201ENST00000624300 1904 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USP48Q86UV5 RNU1-72P-201ENST00000362976 153 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 RNU6-746P-201ENST00000384112 109 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 Y_RNA.793-201ENST00000411222 111 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 Y_RNA.626-201ENST00000411288 95 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.62□□□□□ -1.83
USP48Q86UV5 TRIAP1P1-201ENST00000427062 225 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 RNU6-966P-201ENST00000516479 104 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 RNU2-31P-201ENST00000516954 155 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 RNU6-1212P-201ENST00000517023 104 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 AC055872.1-201ENST00000570978 278 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 AC069294.1-201ENST00000608397 350 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 AC099778.2-201ENST00000610904 211 ntBASIC3.62□□□□□ -1.83
USP48Q86UV5 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.62□□□□□ -1.83
USP48Q86UV5 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USP48Q86UV5 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
USP48Q86UV5 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USP48Q86UV5 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
USP48Q86UV5 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP48Q86UV5 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
USP48Q86UV5 RNU6-545P-201ENST00000362681 104 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 Y_RNA.331-201ENST00000365267 102 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 RNU6-47P-201ENST00000383866 107 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 SNORD21-201ENST00000383953 95 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 RNU6-187P-201ENST00000384139 106 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 AC092185.1-201ENST00000491371 97 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 AC083906.5-201ENST00000503722 328 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 RN7SKP43-201ENST00000516173 320 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 RNU1-117P-201ENST00000517041 158 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 RNU6-586P-201ENST00000517265 104 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.61□□□□□ -1.83
USP48Q86UV5 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.61□□□□□ -1.83
USP48Q86UV5 MIR4282-201ENST00000583613 67 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 AC010620.2-201ENST00000600135 313 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 AC022441.3-201ENST00000605737 136 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.61□□□□□ -1.83
USP48Q86UV5 AC006001.4-201ENST00000622243 395 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 MIR3674-201ENST00000636576 68 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 AL355596.1-201ENST00000565399 3996 ntBASIC3.61□□□□□ -1.83
USP48Q86UV5 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
USP48Q86UV5 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.6□□□□□ -1.83
USP48Q86UV5 RNU6-1264P-201ENST00000383891 107 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 RNU6-1274P-201ENST00000384557 107 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 Y_RNA.569-201ENST00000384749 103 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 MIR1294-201ENST00000408503 142 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 RNA5SP475-201ENST00000410568 110 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 COX6CP10-201ENST00000416832 224 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 AC244505.4-201ENST00000434905 287 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 SSXP5-201ENST00000443473 287 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 AC005042.3-201ENST00000453230 174 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 AC074198.2-201ENST00000508153 258 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 RNU6-107P-201ENST00000516643 102 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 RNU6-789P-201ENST00000517105 102 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 AC022559.1-201ENST00000520905 205 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 AC024405.2-202ENST00000532731 184 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
USP48Q86UV5 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP48Q86UV5 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.6□□□□□ -1.83
USP48Q86UV5 AC080128.1-201ENST00000474389 1917 ntBASIC3.6□□□□□ -1.83
USP48Q86UV5 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.59□□□□□ -1.83
USP48Q86UV5 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.59□□□□□ -1.83
USP48Q86UV5 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.59□□□□□ -1.83
USP48Q86UV5 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USP48Q86UV5 MIR410-201ENST00000362222 80 ntBASIC3.59□□□□□ -1.83
USP48Q86UV5 Y_RNA.292-201ENST00000364904 97 ntBASIC3.59□□□□□ -1.83
USP48Q86UV5 Y_RNA.418-201ENST00000384029 102 ntBASIC3.59□□□□□ -1.83
USP48Q86UV5 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USP48Q86UV5 RPL19P1-201ENST00000411635 428 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms