Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
HDAC4P56524 RNU6-137P-201ENST00000363680 108 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 RNU6-281P-201ENST00000384212 103 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 RNU6-318P-201ENST00000384283 103 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 SNORA69.1-201ENST00000390904 137 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 RNU4-53P-201ENST00000410828 140 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 AC096638.1-201ENST00000444678 216 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.34□□□□□ -2.03
HDAC4P56524 RNU7-87P-201ENST00000459343 62 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 RNU6-1114P-201ENST00000516022 107 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 RNU6-965P-201ENST00000516721 96 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 RNU6-1198P-201ENST00000516904 67 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 RNA5SP54-201ENST00000516951 92 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 RNU7-4P-201ENST00000516961 62 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 MIR5188-201ENST00000583467 113 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 MIR4448-201ENST00000584360 86 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.34□□□□□ -2.03
HDAC4P56524 RPL17P51-201ENST00000605218 238 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 MIR1248-201ENST00000629190 106 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HDAC4P56524 AC091812.1-201ENST00000432235 1948 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 RNU6-873P-201ENST00000363833 107 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 SNORA33.2-201ENST00000365413 134 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 SNORA18.2-201ENST00000383865 132 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 RNU6-26P-201ENST00000383985 107 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 RNU6-541P-201ENST00000384709 110 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 SNORD23.1-201ENST00000408212 104 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 MIR320B2-201ENST00000408479 138 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 AL356320.1-201ENST00000429616 163 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 USP9YP16-201ENST00000430287 407 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.33□□□□□ -2.04
HDAC4P56524 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.33□□□□□ -2.04
HDAC4P56524 MTCO3P8-201ENST00000453691 755 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 USP9YP23-201ENST00000455085 407 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 AC112492.4-201ENST00000456549 352 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 AC107032.1-201ENST00000485945 480 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 SCARNA15.1-201ENST00000516384 125 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 AC034114.1-201ENST00000520293 285 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.33□□□□□ -2.04
HDAC4P56524 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.33□□□□□ -2.04
HDAC4P56524 AC040896.1-201ENST00000613819 479 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 AL132822.1-201ENST00000617063 513 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 AC005562.2-201ENST00000618264 111 ntBASIC2.33□□□□□ -2.04
HDAC4P56524 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HDAC4P56524 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
HDAC4P56524 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
HDAC4P56524 RNA5SP361-201ENST00000362686 118 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 MIR221-201ENST00000385135 110 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 AC027124.2-201ENST00000428249 105 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.32□□□□□ -2.04
HDAC4P56524 ATP5EP1-201ENST00000510257 156 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 RNA5SP458-201ENST00000516188 119 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 RNU6-667P-201ENST00000517186 102 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.32□□□□□ -2.04
HDAC4P56524 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.32□□□□□ -2.04
HDAC4P56524 AC026271.5-201ENST00000577873 130 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 AL031274.2-201ENST00000599419 203 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 AC104695.3-201ENST00000604052 296 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 SNRPGP20-201ENST00000604477 205 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 AC083806.3-201ENST00000614016 455 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 U2.1-201ENST00000618978 145 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 AC009831.4-201ENST00000620744 325 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
HDAC4P56524 AP000553.5-201ENST00000641933 54 ntBASIC2.32□□□□□ -2.04
HDAC4P56524 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HDAC4P56524 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.31□□□□□ -2.04
HDAC4P56524 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HDAC4P56524 RNU6-1301P-201ENST00000362724 104 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 RNU1-76P-201ENST00000362903 159 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 RNU6-234P-201ENST00000365229 104 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 RNU6-1001P-201ENST00000411265 100 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.31□□□□□ -2.04
HDAC4P56524 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.31□□□□□ -2.04
HDAC4P56524 RNU6-1098P-201ENST00000516772 96 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 AC144568.1-201ENST00000520139 137 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.31□□□□□ -2.04
HDAC4P56524 AC006600.1-201ENST00000572529 153 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.31□□□□□ -2.04
HDAC4P56524 MIR5695-201ENST00000579717 85 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 AC002984.1-201ENST00000591692 448 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.31□□□□□ -2.04
HDAC4P56524 AC016925.2-201ENST00000605108 242 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 Y_RNA.812-201ENST00000610788 101 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 Y_RNA.784-201ENST00000613803 101 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 Y_RNA.787-201ENST00000616522 101 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 Y_RNA.780-201ENST00000617336 101 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 Y_RNA.801-201ENST00000619005 101 ntBASIC2.31□□□□□ -2.04
HDAC4P56524 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HDAC4P56524 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HDAC4P56524 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HDAC4P56524 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HDAC4P56524 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HDAC4P56524 Y_RNA.202-201ENST00000364083 110 ntBASIC2.3□□□□□ -2.04
HDAC4P56524 RNU6-611P-201ENST00000384276 104 ntBASIC2.3□□□□□ -2.04
HDAC4P56524 MIR329-1-201ENST00000385028 80 ntBASIC2.3□□□□□ -2.04
HDAC4P56524 MRPL42P3-201ENST00000401492 326 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms