Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC112492.4-201ENST00000456549 352 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AC025033.1-201ENST00000463883 194 ntBASIC2.08□□□□□ -2.08
MSH3P20585 RPS27P21-201ENST00000486977 252 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.08□□□□□ -2.08
MSH3P20585 MIR449C-201ENST00000516047 92 ntBASIC2.08□□□□□ -2.08
MSH3P20585 SNORA40.14-201ENST00000516543 86 ntBASIC2.08□□□□□ -2.08
MSH3P20585 MIR514B-201ENST00000516774 80 ntBASIC2.08□□□□□ -2.08
MSH3P20585 RNU1-40P-201ENST00000516816 164 ntBASIC2.08□□□□□ -2.08
MSH3P20585 RNU1-97P-201ENST00000516872 164 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AC022868.1-201ENST00000517767 391 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AC091144.1-201ENST00000519573 138 ntBASIC2.08□□□□□ -2.08
MSH3P20585 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.08□□□□□ -2.08
MSH3P20585 MIR5695-201ENST00000579717 85 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AC013412.1-201ENST00000610687 192 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AC005296.1-201ENST00000616145 209 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AL138825.1-201ENST00000618587 192 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AP000553.5-201ENST00000641933 54 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AC005592.1-201ENST00000566527 1640 ntBASIC2.08□□□□□ -2.08
MSH3P20585 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
MSH3P20585 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.07□□□□□ -2.08
MSH3P20585 RNU1-76P-201ENST00000362903 159 ntBASIC2.07□□□□□ -2.08
MSH3P20585 Y_RNA.158-201ENST00000363651 101 ntBASIC2.07□□□□□ -2.08
MSH3P20585 AC117470.1-201ENST00000381974 330 ntBASIC2.07□□□□□ -2.08
MSH3P20585 RNU6-318P-201ENST00000384283 103 ntBASIC2.07□□□□□ -2.08
MSH3P20585 SNORA64-201ENST00000384674 134 ntBASIC2.07□□□□□ -2.08
MSH3P20585 Y_RNA.645-201ENST00000391229 102 ntBASIC2.07□□□□□ -2.08
MSH3P20585 SNORD23.1-201ENST00000408212 104 ntBASIC2.07□□□□□ -2.08
MSH3P20585 AC004866.1-201ENST00000411748 78 ntBASIC2.07□□□□□ -2.08
MSH3P20585 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.07□□□□□ -2.08
MSH3P20585 AC004386.2-201ENST00000441858 148 ntBASIC2.07□□□□□ -2.08
MSH3P20585 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.07□□□□□ -2.08
MSH3P20585 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.07□□□□□ -2.08
MSH3P20585 AC018868.1-201ENST00000491307 315 ntBASIC2.07□□□□□ -2.08
MSH3P20585 SNORA25.14-201ENST00000516481 132 ntBASIC2.07□□□□□ -2.08
MSH3P20585 RNU2-44P-201ENST00000516795 194 ntBASIC2.07□□□□□ -2.08
MSH3P20585 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.07□□□□□ -2.08
MSH3P20585 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.07□□□□□ -2.08
MSH3P20585 AC022616.8-201ENST00000533569 253 ntBASIC2.07□□□□□ -2.08
MSH3P20585 AL442163.3-201ENST00000554110 156 ntBASIC2.07□□□□□ -2.08
MSH3P20585 AC125232.2-201ENST00000592457 143 ntBASIC2.07□□□□□ -2.08
MSH3P20585 AC104695.3-201ENST00000604052 296 ntBASIC2.07□□□□□ -2.08
MSH3P20585 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.07□□□□□ -2.08
MSH3P20585 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.07□□□□□ -2.08
MSH3P20585 AC040896.1-201ENST00000613819 479 ntBASIC2.07□□□□□ -2.08
MSH3P20585 MIR219B-201ENST00000637023 88 ntBASIC2.07□□□□□ -2.08
MSH3P20585 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
MSH3P20585 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
MSH3P20585 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.06□□□□□ -2.08
MSH3P20585 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
MSH3P20585 RNU1-62P-201ENST00000362599 164 ntBASIC2.06□□□□□ -2.08
MSH3P20585 RNU6-1301P-201ENST00000362724 104 ntBASIC2.06□□□□□ -2.08
MSH3P20585 Y_RNA.422-201ENST00000384054 114 ntBASIC2.06□□□□□ -2.08
MSH3P20585 SNORA67.3-201ENST00000384366 140 ntBASIC2.06□□□□□ -2.08
MSH3P20585 MIR329-1-201ENST00000385028 80 ntBASIC2.06□□□□□ -2.08
MSH3P20585 MIR320B2-201ENST00000408479 138 ntBASIC2.06□□□□□ -2.08
MSH3P20585 MTCO3P19-201ENST00000415864 321 ntBASIC2.06□□□□□ -2.08
MSH3P20585 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.06□□□□□ -2.08
MSH3P20585 RNU6-717P-201ENST00000459076 104 ntBASIC2.06□□□□□ -2.08
MSH3P20585 AC093852.1-201ENST00000503587 266 ntBASIC2.06□□□□□ -2.08
MSH3P20585 RNU6-965P-201ENST00000516721 96 ntBASIC2.06□□□□□ -2.08
MSH3P20585 RNU6-1098P-201ENST00000516772 96 ntBASIC2.06□□□□□ -2.08
MSH3P20585 CYCSP26-201ENST00000534107 320 ntBASIC2.06□□□□□ -2.08
MSH3P20585 AC093023.1-201ENST00000547375 507 ntBASIC2.06□□□□□ -2.08
MSH3P20585 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.06□□□□□ -2.08
MSH3P20585 HSBP1P1-201ENST00000555205 166 ntBASIC2.06□□□□□ -2.08
MSH3P20585 MIR4648-201ENST00000580107 72 ntBASIC2.06□□□□□ -2.08
MSH3P20585 MIR1248-201ENST00000629190 106 ntBASIC2.06□□□□□ -2.08
MSH3P20585 AC009487.4-201ENST00000624969 3585 ntBASIC2.06□□□□□ -2.08
MSH3P20585 RNU5F-3P-201ENST00000363767 117 ntBASIC2.05□□□□□ -2.08
MSH3P20585 RNU6-879P-201ENST00000364328 108 ntBASIC2.05□□□□□ -2.08
MSH3P20585 RNU6-639P-201ENST00000384074 107 ntBASIC2.05□□□□□ -2.08
MSH3P20585 RNU6-708P-201ENST00000384217 107 ntBASIC2.05□□□□□ -2.08
MSH3P20585 RNU6-1145P-201ENST00000384246 107 ntBASIC2.05□□□□□ -2.08
MSH3P20585 MIR628-201ENST00000385229 95 ntBASIC2.05□□□□□ -2.08
MSH3P20585 AL023284.1-201ENST00000403956 276 ntBASIC2.05□□□□□ -2.08
MSH3P20585 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH3P20585 RPS23P5-201ENST00000495419 428 ntBASIC2.05□□□□□ -2.08
MSH3P20585 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH3P20585 SCARNA15.1-201ENST00000516384 125 ntBASIC2.05□□□□□ -2.08
MSH3P20585 MIR4680-201ENST00000580906 66 ntBASIC2.05□□□□□ -2.08
MSH3P20585 MIR5006-201ENST00000583027 110 ntBASIC2.05□□□□□ -2.08
MSH3P20585 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
MSH3P20585 Y_RNA.27-201ENST00000362540 103 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNA5SP361-201ENST00000362686 118 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNU6-234P-201ENST00000365229 104 ntBASIC2.04□□□□□ -2.08
MSH3P20585 SNORA25B-201ENST00000365507 128 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNU6-793P-201ENST00000384233 104 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNU6-611P-201ENST00000384276 104 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNY3P4-201ENST00000384428 101 ntBASIC2.04□□□□□ -2.08
MSH3P20585 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
MSH3P20585 RNU6-1001P-201ENST00000411265 100 ntBASIC2.04□□□□□ -2.08
MSH3P20585 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH3P20585 AC009238.1-201ENST00000442165 424 ntBASIC2.04□□□□□ -2.08
MSH3P20585 AC010095.1-201ENST00000443543 144 ntBASIC2.04□□□□□ -2.08
MSH3P20585 AC009237.6-201ENST00000446969 424 ntBASIC2.04□□□□□ -2.08
MSH3P20585 AC009237.7-201ENST00000447357 229 ntBASIC2.04□□□□□ -2.08
MSH3P20585 AL021397.1-201ENST00000451806 248 ntBASIC2.04□□□□□ -2.08
MSH3P20585 AC091179.3-201ENST00000474761 144 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNU5F-4P-201ENST00000516581 114 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNU6-344P-201ENST00000516635 111 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms