Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC005345.1-201ENST00000431868 217 ntBASIC-0.3□□□□□ -2.46
COL6A3P12111 AC020550.1-201ENST00000447385 163 ntBASIC-0.3□□□□□ -2.46
COL6A3P12111 AC024995.1-201ENST00000523014 93 ntBASIC-0.3□□□□□ -2.46
COL6A3P12111 MTCO3P15-201ENST00000526563 574 ntBASIC-0.3□□□□□ -2.46
COL6A3P12111 SNORA25.18-201ENST00000607153 114 ntBASIC-0.3□□□□□ -2.46
COL6A3P12111 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
COL6A3P12111 MTND4P4-201ENST00000439033 1366 ntBASIC-0.3□□□□□ -2.46
COL6A3P12111 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC-0.31□□□□□ -2.46
COL6A3P12111 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-127P-201ENST00000390897 107 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AL139421.1-201ENST00000423010 169 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC-0.31□□□□□ -2.46
COL6A3P12111 AC093850.1-201ENST00000454121 251 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 TMEM251P1-201ENST00000503717 318 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AC005176.2-201ENST00000596933 147 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AL034555.1-201ENST00000604816 211 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC-0.31□□□□□ -2.46
COL6A3P12111 AL162726.3-218ENST00000636401 95 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-619P-201ENST00000365146 108 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AL354692.1-201ENST00000423044 315 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 MTCYBP5-201ENST00000423752 1135 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AC010154.1-201ENST00000425857 269 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AC013262.1-201ENST00000426710 252 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AL163973.1-201ENST00000484753 577 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-1041P-201ENST00000516254 102 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-1098P-201ENST00000516772 96 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 MTND2P7-201ENST00000521337 640 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC-0.31□□□□□ -2.46
COL6A3P12111 MTND3P19-201ENST00000603825 345 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AC246785.4-201ENST00000605374 287 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AC009268.2-201ENST00000621925 457 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 U6.101-201ENST00000637707 76 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-1339P-201ENST00000363574 91 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU4-56P-201ENST00000364700 142 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-637P-201ENST00000384050 107 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC-0.31□□□□□ -2.46
COL6A3P12111 AL079342.2-201ENST00000403367 482 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 MIR1827-201ENST00000408549 66 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-57P-201ENST00000411348 103 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 PCNPP5-201ENST00000452246 481 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 ART2BP-201ENST00000453501 499 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC-0.31□□□□□ -2.46
COL6A3P12111 SNORA70.12-201ENST00000516084 153 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 RNU6-703P-201ENST00000516946 107 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-0.31□□□□□ -2.46
COL6A3P12111 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.31□□□□□ -2.46
COL6A3P12111 AC023824.3-201ENST00000569003 562 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 BNIP3P30-201ENST00000601184 574 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 AL118556.2-201ENST00000614375 824 ntBASIC-0.31□□□□□ -2.46
COL6A3P12111 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-0.31□□□□□ -2.46
COL6A3P12111 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 Y_RNA.396-201ENST00000383949 103 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 RNA5SP467-201ENST00000391274 118 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC-0.32□□□□□ -2.46
COL6A3P12111 MTCO1P5-201ENST00000433573 344 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC-0.32□□□□□ -2.46
COL6A3P12111 snoU13.13-201ENST00000458842 104 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 RNU6-948P-201ENST00000516374 107 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 RNU6-143P-201ENST00000516942 93 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC091163.3-201ENST00000518269 1144 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC009902.1-201ENST00000519351 183 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 MIR4432-201ENST00000581823 84 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AL606834.3-201ENST00000602615 496 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC078795.2-201ENST00000602835 1252 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 Z99497.2-201ENST00000603634 310 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AL670379.3-201ENST00000605040 251 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 RNU6-223P-201ENST00000362830 107 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC-0.32□□□□□ -2.46
COL6A3P12111 SNORA2B-201ENST00000384583 137 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 PCNPP3-201ENST00000393579 471 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC-0.32□□□□□ -2.46
COL6A3P12111 AL133264.1-201ENST00000407157 562 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC-0.32□□□□□ -2.46
COL6A3P12111 AC023827.1-201ENST00000569247 97 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 VN1R88P-201ENST00000596787 292 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC079610.2-201ENST00000604818 690 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC091946.2-201ENST00000606105 291 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC008536.2-201ENST00000607284 349 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC-0.32□□□□□ -2.46
COL6A3P12111 MIR6079-201ENST00000635807 62 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 AC092104.1-201ENST00000497346 1441 ntBASIC-0.32□□□□□ -2.46
COL6A3P12111 MIR340-201ENST00000362125 95 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 RNU6-1066P-201ENST00000363573 105 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 RNU6-1322P-201ENST00000364309 107 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 Y_RNA.419-201ENST00000384041 102 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 RNU6-658P-201ENST00000384606 106 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 SNORA12.2-201ENST00000391040 156 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 RPS20P2-201ENST00000402520 389 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 FCF1P10-201ENST00000407590 479 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 ELOCP21-201ENST00000412558 336 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.33□□□□□ -2.46
COL6A3P12111 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC-0.33□□□□□ -2.46
COL6A3P12111 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-0.33□□□□□ -2.46
COL6A3P12111 AC004223.2-201ENST00000590309 544 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 RNU6-284P-201ENST00000411105 106 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 CDK8P2-201ENST00000415020 547 ntBASIC-0.33□□□□□ -2.46
COL6A3P12111 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC-0.33□□□□□ -2.46
COL6A3P12111 MTCO2P23-201ENST00000425216 680 ntBASIC-0.33□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms