Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
SHOXO15266 AC080128.1-201ENST00000474389 1917 ntBASIC3.13□□□□□ -1.91
SHOXO15266 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.13□□□□□ -1.91
SHOXO15266 Y_RNA.24-201ENST00000362508 103 ntBASIC3.13□□□□□ -1.91
SHOXO15266 Y_RNA.124-201ENST00000363339 93 ntBASIC3.13□□□□□ -1.91
SHOXO15266 RNU4-10P-201ENST00000364383 140 ntBASIC3.13□□□□□ -1.91
SHOXO15266 RNU6-407P-201ENST00000365280 104 ntBASIC3.13□□□□□ -1.91
SHOXO15266 Y_RNA.400-201ENST00000383963 111 ntBASIC3.13□□□□□ -1.91
SHOXO15266 MIR554-201ENST00000384874 96 ntBASIC3.13□□□□□ -1.91
SHOXO15266 RPL21P65-201ENST00000406094 466 ntBASIC3.13□□□□□ -1.91
SHOXO15266 MIR548I2-201ENST00000408348 149 ntBASIC3.13□□□□□ -1.91
SHOXO15266 AC093578.1-201ENST00000415219 368 ntBASIC3.13□□□□□ -1.91
SHOXO15266 AC006989.1-201ENST00000427212 131 ntBASIC3.13□□□□□ -1.91
SHOXO15266 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.13□□□□□ -1.91
SHOXO15266 AL161788.1-201ENST00000441805 169 ntBASIC3.13□□□□□ -1.91
SHOXO15266 SNORD65B-201ENST00000459126 73 ntBASIC3.13□□□□□ -1.91
SHOXO15266 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.13□□□□□ -1.91
SHOXO15266 AC245166.1-201ENST00000521012 253 ntBASIC3.13□□□□□ -1.91
SHOXO15266 AC007536.1-201ENST00000533382 349 ntBASIC3.13□□□□□ -1.91
SHOXO15266 MIR548AI-201ENST00000579940 88 ntBASIC3.13□□□□□ -1.91
SHOXO15266 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.13□□□□□ -1.91
SHOXO15266 ZYXP1-201ENST00000617638 118 ntBASIC3.13□□□□□ -1.91
SHOXO15266 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.13□□□□□ -1.91
SHOXO15266 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.13□□□□□ -1.91
SHOXO15266 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.13□□□□□ -1.91
SHOXO15266 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
SHOXO15266 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.12□□□□□ -1.91
SHOXO15266 AC092435.3-201ENST00000565538 3654 ntBASIC3.12□□□□□ -1.91
SHOXO15266 snoU2_19.4-201ENST00000364329 80 ntBASIC3.12□□□□□ -1.91
SHOXO15266 RNU6-1130P-201ENST00000365434 107 ntBASIC3.12□□□□□ -1.91
SHOXO15266 RNU6-969P-201ENST00000383900 105 ntBASIC3.12□□□□□ -1.91
SHOXO15266 Y_RNA.488-201ENST00000384403 102 ntBASIC3.12□□□□□ -1.91
SHOXO15266 RN7SKP202-201ENST00000410439 330 ntBASIC3.12□□□□□ -1.91
SHOXO15266 RNU2-63P-201ENST00000410792 194 ntBASIC3.12□□□□□ -1.91
SHOXO15266 RNU2-32P-201ENST00000411193 191 ntBASIC3.12□□□□□ -1.91
SHOXO15266 TBCAP1-201ENST00000436520 327 ntBASIC3.12□□□□□ -1.91
SHOXO15266 SNORA84-201ENST00000459229 133 ntBASIC3.12□□□□□ -1.91
SHOXO15266 RNU7-115P-201ENST00000516433 55 ntBASIC3.12□□□□□ -1.91
SHOXO15266 RNU6-1007P-201ENST00000516586 107 ntBASIC3.12□□□□□ -1.91
SHOXO15266 RNA5SP490-201ENST00000517141 136 ntBASIC3.12□□□□□ -1.91
SHOXO15266 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.12□□□□□ -1.91
SHOXO15266 AC013412.1-201ENST00000610687 192 ntBASIC3.12□□□□□ -1.91
SHOXO15266 MIR492-201ENST00000638676 116 ntBASIC3.12□□□□□ -1.91
SHOXO15266 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHOXO15266 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.11□□□□□ -1.91
SHOXO15266 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
SHOXO15266 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
SHOXO15266 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHOXO15266 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SHOXO15266 SNORD56.3-201ENST00000363507 71 ntBASIC3.11□□□□□ -1.91
SHOXO15266 RNU6-1323P-201ENST00000384025 107 ntBASIC3.11□□□□□ -1.91
SHOXO15266 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.11□□□□□ -1.91
SHOXO15266 RNU6-1328P-201ENST00000410938 106 ntBASIC3.11□□□□□ -1.91
SHOXO15266 AL356095.1-201ENST00000417217 199 ntBASIC3.11□□□□□ -1.91
SHOXO15266 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.11□□□□□ -1.91
SHOXO15266 AC016717.1-201ENST00000448918 286 ntBASIC3.11□□□□□ -1.91
SHOXO15266 AC021205.2-201ENST00000480069 347 ntBASIC3.11□□□□□ -1.91
SHOXO15266 AC023141.11-201ENST00000508864 202 ntBASIC3.11□□□□□ -1.91
SHOXO15266 RNA5SP20-201ENST00000515976 84 ntBASIC3.11□□□□□ -1.91
SHOXO15266 SNORA31.26-201ENST00000517250 137 ntBASIC3.11□□□□□ -1.91
SHOXO15266 AC025647.1-201ENST00000517879 253 ntBASIC3.11□□□□□ -1.91
SHOXO15266 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.11□□□□□ -1.91
SHOXO15266 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.11□□□□□ -1.91
SHOXO15266 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.11□□□□□ -1.91
SHOXO15266 MIR6867-201ENST00000610636 67 ntBASIC3.11□□□□□ -1.91
SHOXO15266 MIR6500-201ENST00000622700 86 ntBASIC3.11□□□□□ -1.91
SHOXO15266 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SHOXO15266 RNU6-1240P-201ENST00000365155 104 ntBASIC3.1□□□□□ -1.91
SHOXO15266 RNU6-1228P-201ENST00000391014 107 ntBASIC3.1□□□□□ -1.91
SHOXO15266 RPL21P3-201ENST00000395517 478 ntBASIC3.1□□□□□ -1.91
SHOXO15266 MIR887-201ENST00000401258 79 ntBASIC3.1□□□□□ -1.91
SHOXO15266 RNA5SP344-201ENST00000411081 104 ntBASIC3.1□□□□□ -1.91
SHOXO15266 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
SHOXO15266 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.1□□□□□ -1.91
SHOXO15266 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.1□□□□□ -1.91
SHOXO15266 AC244505.4-201ENST00000434905 287 ntBASIC3.1□□□□□ -1.91
SHOXO15266 SSXP5-201ENST00000443473 287 ntBASIC3.1□□□□□ -1.91
SHOXO15266 AC010409.1-201ENST00000487382 476 ntBASIC3.1□□□□□ -1.91
SHOXO15266 AC117454.1-201ENST00000491120 168 ntBASIC3.1□□□□□ -1.91
SHOXO15266 RNA5SP164-201ENST00000516533 110 ntBASIC3.1□□□□□ -1.91
SHOXO15266 RNU6-965P-201ENST00000516721 96 ntBASIC3.1□□□□□ -1.91
SHOXO15266 SNORA48.11-201ENST00000517015 89 ntBASIC3.1□□□□□ -1.91
SHOXO15266 AC109810.1-201ENST00000534066 224 ntBASIC3.1□□□□□ -1.91
SHOXO15266 YPEL5P3-201ENST00000547227 352 ntBASIC3.1□□□□□ -1.91
SHOXO15266 AL356280.1-201ENST00000603614 379 ntBASIC3.1□□□□□ -1.91
SHOXO15266 AP003357.1-201ENST00000604497 148 ntBASIC3.1□□□□□ -1.91
SHOXO15266 AC005972.2-201ENST00000604690 348 ntBASIC3.1□□□□□ -1.91
SHOXO15266 AC096577.2-201ENST00000611455 153 ntBASIC3.1□□□□□ -1.91
SHOXO15266 Y_RNA.778-201ENST00000620203 90 ntBASIC3.1□□□□□ -1.91
SHOXO15266 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SHOXO15266 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHOXO15266 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SHOXO15266 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SHOXO15266 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.09□□□□□ -1.91
SHOXO15266 RNU6-81P-201ENST00000365608 104 ntBASIC3.09□□□□□ -1.91
SHOXO15266 RNU6-1081P-201ENST00000384537 107 ntBASIC3.09□□□□□ -1.91
SHOXO15266 MIR95-201ENST00000385072 81 ntBASIC3.09□□□□□ -1.91
SHOXO15266 MIR134-201ENST00000385258 73 ntBASIC3.09□□□□□ -1.91
SHOXO15266 MIR199A2-201ENST00000385289 110 ntBASIC3.09□□□□□ -1.91
SHOXO15266 MIR670-201ENST00000390142 98 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms