Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CBX4O00257 SNORA25.1-201ENST00000362326 128 ntBASIC3.01□□□□□ -1.93
CBX4O00257 RNU6-545P-201ENST00000362681 104 ntBASIC3.01□□□□□ -1.93
CBX4O00257 Y_RNA.101-201ENST00000363154 102 ntBASIC3.01□□□□□ -1.93
CBX4O00257 RNU6-438P-201ENST00000365561 103 ntBASIC3.01□□□□□ -1.93
CBX4O00257 Y_RNA.383-201ENST00000383855 97 ntBASIC3.01□□□□□ -1.93
CBX4O00257 Y_RNA.416-201ENST00000384014 113 ntBASIC3.01□□□□□ -1.93
CBX4O00257 AL357139.1-201ENST00000407792 426 ntBASIC3.01□□□□□ -1.93
CBX4O00257 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.01□□□□□ -1.93
CBX4O00257 UQCRHP3-201ENST00000451503 251 ntBASIC3.01□□□□□ -1.93
CBX4O00257 RNU6-388P-201ENST00000517012 105 ntBASIC3.01□□□□□ -1.93
CBX4O00257 RNU6-389P-201ENST00000517048 105 ntBASIC3.01□□□□□ -1.93
CBX4O00257 AP002001.1-203ENST00000534002 267 ntBASIC3.01□□□□□ -1.93
CBX4O00257 MIR3668-201ENST00000582138 75 ntBASIC3.01□□□□□ -1.93
CBX4O00257 AC005357.1-201ENST00000588399 301 ntBASIC3.01□□□□□ -1.93
CBX4O00257 Y_RNA.60-201ENST00000362831 98 ntBASIC3□□□□□ -1.93
CBX4O00257 SNORD31B-201ENST00000364977 69 ntBASIC3□□□□□ -1.93
CBX4O00257 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3□□□□□ -1.93
CBX4O00257 AL445687.1-201ENST00000439946 251 ntBASIC3□□□□□ -1.93
CBX4O00257 AL135938.1-201ENST00000443141 297 ntBASIC3□□□□□ -1.93
CBX4O00257 Z96811.1-201ENST00000445880 108 ntBASIC3□□□□□ -1.93
CBX4O00257 RPL23AP3-201ENST00000453844 468 ntBASIC3□□□□□ -1.93
CBX4O00257 HMGN2P9-201ENST00000476875 229 ntBASIC3□□□□□ -1.93
CBX4O00257 Y_RNA.673-201ENST00000516306 88 ntBASIC3□□□□□ -1.93
CBX4O00257 Y_RNA.680-201ENST00000516441 93 ntBASIC3□□□□□ -1.93
CBX4O00257 RNU6-794P-201ENST00000517261 64 ntBASIC3□□□□□ -1.93
CBX4O00257 AC107016.2-201ENST00000547968 190 ntBASIC3□□□□□ -1.93
CBX4O00257 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3□□□□□ -1.93
CBX4O00257 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3□□□□□ -1.93
CBX4O00257 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
CBX4O00257 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3□□□□□ -1.93
CBX4O00257 AC135776.4-201ENST00000624300 1904 ntBASIC2.99□□□□□ -1.93
CBX4O00257 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CBX4O00257 AC008264.2-201ENST00000610193 3731 ntBASIC2.99□□□□□ -1.93
CBX4O00257 Y_RNA.54-201ENST00000362766 105 ntBASIC2.99□□□□□ -1.93
CBX4O00257 RNU1-23P-201ENST00000363361 144 ntBASIC2.99□□□□□ -1.93
CBX4O00257 SNORD27-201ENST00000363981 72 ntBASIC2.99□□□□□ -1.93
CBX4O00257 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
CBX4O00257 MIR561-201ENST00000385216 97 ntBASIC2.99□□□□□ -1.93
CBX4O00257 MIR548B-201ENST00000385247 97 ntBASIC2.99□□□□□ -1.93
CBX4O00257 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
CBX4O00257 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CBX4O00257 AC009963.1-201ENST00000417265 157 ntBASIC2.99□□□□□ -1.93
CBX4O00257 AC003685.2-201ENST00000422795 395 ntBASIC2.99□□□□□ -1.93
CBX4O00257 RNA5SP385-201ENST00000515947 110 ntBASIC2.99□□□□□ -1.93
CBX4O00257 RNA5SP490-201ENST00000517141 136 ntBASIC2.99□□□□□ -1.93
CBX4O00257 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.99□□□□□ -1.93
CBX4O00257 U2.14-201ENST00000615943 113 ntBASIC2.99□□□□□ -1.93
CBX4O00257 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
CBX4O00257 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.99□□□□□ -1.93
CBX4O00257 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
CBX4O00257 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.98□□□□□ -1.93
CBX4O00257 RNU6-1266P-201ENST00000362794 105 ntBASIC2.98□□□□□ -1.93
CBX4O00257 SNORA9.2-201ENST00000365361 133 ntBASIC2.98□□□□□ -1.93
CBX4O00257 AL603910.2-201ENST00000407268 136 ntBASIC2.98□□□□□ -1.93
CBX4O00257 AC108938.1-201ENST00000451204 136 ntBASIC2.98□□□□□ -1.93
CBX4O00257 ATP5EP1-201ENST00000510257 156 ntBASIC2.98□□□□□ -1.93
CBX4O00257 MTND1P19-201ENST00000511780 315 ntBASIC2.98□□□□□ -1.93
CBX4O00257 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.98□□□□□ -1.93
CBX4O00257 MIR1248-201ENST00000629190 106 ntBASIC2.98□□□□□ -1.93
CBX4O00257 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CBX4O00257 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.98□□□□□ -1.93
CBX4O00257 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.98□□□□□ -1.93
CBX4O00257 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.98□□□□□ -1.93
CBX4O00257 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.98□□□□□ -1.93
CBX4O00257 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CBX4O00257 AL136360.1-201ENST00000503377 1900 ntBASIC2.97□□□□□ -1.93
CBX4O00257 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
CBX4O00257 Y_RNA.20-201ENST00000362479 113 ntBASIC2.97□□□□□ -1.93
CBX4O00257 RNU6-743P-201ENST00000364151 106 ntBASIC2.97□□□□□ -1.93
CBX4O00257 Y_RNA.257-201ENST00000364596 102 ntBASIC2.97□□□□□ -1.93
CBX4O00257 RNA5SP125-201ENST00000364843 120 ntBASIC2.97□□□□□ -1.93
CBX4O00257 RNU6-1180P-201ENST00000364935 107 ntBASIC2.97□□□□□ -1.93
CBX4O00257 Y_RNA.515-201ENST00000384535 112 ntBASIC2.97□□□□□ -1.93
CBX4O00257 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.97□□□□□ -1.93
CBX4O00257 RPL19P1-201ENST00000411635 428 ntBASIC2.97□□□□□ -1.93
CBX4O00257 AL139281.1-201ENST00000422120 335 ntBASIC2.97□□□□□ -1.93
CBX4O00257 AC092427.1-202ENST00000430569 476 ntBASIC2.97□□□□□ -1.93
CBX4O00257 MRPS10P1-201ENST00000448483 130 ntBASIC2.97□□□□□ -1.93
CBX4O00257 RNU7-57P-201ENST00000459540 60 ntBASIC2.97□□□□□ -1.93
CBX4O00257 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.97□□□□□ -1.93
CBX4O00257 RN7SKP43-201ENST00000516173 320 ntBASIC2.97□□□□□ -1.93
CBX4O00257 RNU2-12P-201ENST00000517216 168 ntBASIC2.97□□□□□ -1.93
CBX4O00257 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.97□□□□□ -1.93
CBX4O00257 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.97□□□□□ -1.93
CBX4O00257 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.97□□□□□ -1.93
CBX4O00257 MIR4319-201ENST00000577285 85 ntBASIC2.97□□□□□ -1.93
CBX4O00257 MIR4506-201ENST00000584693 77 ntBASIC2.97□□□□□ -1.93
CBX4O00257 BX284668.6-201ENST00000606899 438 ntBASIC2.97□□□□□ -1.93
CBX4O00257 AC013412.1-201ENST00000610687 192 ntBASIC2.97□□□□□ -1.93
CBX4O00257 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.97□□□□□ -1.93
CBX4O00257 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.97□□□□□ -1.93
CBX4O00257 FAM35CP-201ENST00000554755 2470 ntBASIC2.97□□□□□ -1.93
CBX4O00257 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CBX4O00257 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.97□□□□□ -1.93
CBX4O00257 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.96□□□□□ -1.94
CBX4O00257 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.96□□□□□ -1.94
CBX4O00257 Y_RNA.44-201ENST00000362676 108 ntBASIC2.96□□□□□ -1.94
CBX4O00257 Y_RNA.136-201ENST00000363444 102 ntBASIC2.96□□□□□ -1.94
CBX4O00257 RNU6-324P-201ENST00000363957 106 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms