Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 Y_RNA.483-201ENST00000384380 101 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AL135786.1-201ENST00000415892 214 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 TOMM22P2-201ENST00000430735 237 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 TRBVB-201ENST00000477100 408 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AC098869.1-201ENST00000481627 292 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AC023157.2-201ENST00000540596 141 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AC022441.3-201ENST00000605737 136 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 SNORD113-5-201ENST00000607261 78 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AC062037.2-201ENST00000610137 73 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AC099778.2-201ENST00000610904 211 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 AL355596.1-201ENST00000565399 3996 ntBASIC3.27□□□□□ -1.89
CCDC85CA6NKD9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 MIR335-201ENST00000362173 94 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 RNA5SP289-201ENST00000362332 137 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 SNORD31B-201ENST00000364977 69 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 RNU2-32P-201ENST00000411193 191 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AC009963.1-201ENST00000417265 157 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AC016925.1-201ENST00000458303 298 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 HMGN2P9-201ENST00000476875 229 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 SEPT14P8-201ENST00000508026 178 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 ATP5EP1-201ENST00000510257 156 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AP002001.1-203ENST00000534002 267 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 MIR4498-201ENST00000577599 66 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AP000942.3-201ENST00000603702 160 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AP001282.2-201ENST00000616149 309 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 U4atac.1-201ENST00000618345 95 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 AC022149.2-201ENST00000621061 203 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 MIR3674-201ENST00000636576 68 ntBASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC85CA6NKD9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 SNORA51.4-201ENST00000364993 124 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 RNU6-505P-201ENST00000384427 107 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 Y_RNA.562-201ENST00000384695 113 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 MIR215-201ENST00000384858 110 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 MIR561-201ENST00000385216 97 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 MIR1283-1-201ENST00000408494 87 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 RN7SKP223-201ENST00000410582 62 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 CST9LP2-201ENST00000437612 320 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 UQCRHP3-201ENST00000451503 251 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 HSPE1P25-201ENST00000455484 251 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 SNORD127-201ENST00000458892 86 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 MIR449C-201ENST00000516047 92 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 RNU6-1231P-201ENST00000517185 103 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 RN7SKP40-201ENST00000517211 242 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 AC093331.1-201ENST00000521474 169 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 AC055872.1-201ENST00000570978 278 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 AC006006.1-201ENST00000603082 144 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 AC011373.1-201ENST00000607270 237 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 MIR1248-201ENST00000629190 106 ntBASIC3.25□□□□□ -1.89
CCDC85CA6NKD9 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 RNU4-90P-201ENST00000362773 141 ntBASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 RNU6-1175P-201ENST00000365200 107 ntBASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 RNU2-20P-201ENST00000410425 191 ntBASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 RNU7-14P-201ENST00000459331 62 ntBASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 AL355297.2-201ENST00000604792 129 ntBASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 AL590240.4-201ENST00000616908 390 ntBASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 CTSLP2-204ENST00000629029 392 ntBASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC85CA6NKD9 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 AC010615.1-201ENST00000594254 1764 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 RNU1-112P-201ENST00000364401 164 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 RNA5SP125-201ENST00000364843 120 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 SNORD87-201ENST00000364849 89 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 RNU6-290P-201ENST00000365212 101 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 MIR9-1-201ENST00000385198 89 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 MIR518E-201ENST00000385252 88 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 AC018868.1-201ENST00000491307 315 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 RNU1-117P-201ENST00000517041 158 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 RNU6-570P-201ENST00000517051 105 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 AL109918.3-201ENST00000603072 338 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 AC096644.4-201ENST00000563417 2912 ntBASIC3.23□□□□□ -1.89
CCDC85CA6NKD9 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC85CA6NKD9 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms