Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 Z75741.1-201ENST00000446793 314 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 AC245047.8-201ENST00000456455 284 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 RNU7-170P-201ENST00000459303 61 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 AC107027.2-201ENST00000512197 115 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 AC107934.2-201ENST00000518653 310 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 AC027176.1-201ENST00000560204 514 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 MIR5047-201ENST00000579212 100 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 AL391813.1-201ENST00000603098 260 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-91P-201ENST00000607774 107 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 MIR6076-201ENST00000617521 113 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 U6.115-201ENST00000636045 103 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-103P-201ENST00000363686 107 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-899P-201ENST00000363947 107 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 RNA5SP205-201ENST00000364653 136 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.310-201ENST00000365063 113 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.341-201ENST00000365341 102 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 MIR184-201ENST00000384962 84 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 MT-TT-201ENST00000387460 66 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AC115115.1-201ENST00000449927 248 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AL137159.1-201ENST00000452808 512 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AC091179.1-201ENST00000461606 579 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AC112771.1-201ENST00000463581 102 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 RPL23AP67-201ENST00000465341 474 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AC114982.1-201ENST00000469402 321 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-1234P-201ENST00000516877 103 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 HSPE1P18-201ENST00000517602 280 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 DNAJC19P2-201ENST00000593340 302 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AC012493.2-201ENST00000595083 291 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 RNVU1-4-201ENST00000612985 164 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.802-201ENST00000614892 130 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AC002076.2-201ENST00000617362 122 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 AC000403.1-201ENST00000613696 3585 ntBASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CHMP3Q9Y3E7 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 AL136164.4-201ENST00000625013 2135 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.368-201ENST00000365547 113 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 MIR548B-201ENST00000385247 97 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 RPL30P13-201ENST00000418873 348 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 TOMM22P2-201ENST00000430735 237 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 RNU7-141P-201ENST00000459304 62 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 AC008873.1-201ENST00000625051 138 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 AC002546.1-201ENST00000588041 2504 ntBASIC4.12□□□□□ -1.75
CHMP3Q9Y3E7 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.71-201ENST00000362892 104 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.172-201ENST00000363765 102 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-1210P-201ENST00000363775 107 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 MIR513C-201ENST00000401352 84 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 AL355497.1-201ENST00000406262 551 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-710P-201ENST00000410424 105 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 RPS3P1-201ENST00000456781 192 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 PHBP14-201ENST00000512887 367 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-1333P-201ENST00000516162 93 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 AC025281.1-201ENST00000567026 265 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 MIR4474-201ENST00000579189 78 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 MIR8057-201ENST00000620957 69 ntBASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC4.11□□□□□ -1.75
CHMP3Q9Y3E7 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 RNU1-70P-201ENST00000362618 164 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-655P-201ENST00000362858 107 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 RNA5SP374-201ENST00000362939 125 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 MIR128-1-201ENST00000384921 82 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 SNORA48.2-201ENST00000390926 124 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 AC006461.1-201ENST00000412637 326 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 AL441985.1-201ENST00000457727 251 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-1211P-201ENST00000459179 105 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-561P-201ENST00000516222 102 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 YPEL5P2-201ENST00000605553 359 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 U7.8-201ENST00000619968 63 ntBASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CHMP3Q9Y3E7 AC007496.3-201ENST00000624987 3443 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 MIR30E-201ENST00000362104 92 ntBASIC4.09□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.127-201ENST00000363386 109 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms