Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM35Q9UPQ4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM35Q9UPQ4 AL356489.2-201ENST00000566968 3528 ntBASIC5.22□□□□□ -1.57
TRIM35Q9UPQ4 AC007496.3-201ENST00000624987 3443 ntBASIC5.22□□□□□ -1.57
TRIM35Q9UPQ4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.21□□□□□ -1.57
TRIM35Q9UPQ4 AC000403.1-201ENST00000613696 3585 ntBASIC5.21□□□□□ -1.57
TRIM35Q9UPQ4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.57
TRIM35Q9UPQ4 RNU6-1210P-201ENST00000363775 107 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-409P-201ENST00000384114 104 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-748P-201ENST00000384648 107 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-57P-201ENST00000411348 103 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 AC010099.1-201ENST00000455434 375 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-1098P-201ENST00000516772 96 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 MIR2116-201ENST00000517221 80 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 RNA5SP179-201ENST00000517284 121 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 MIR3618-201ENST00000580330 88 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 MIR4753-201ENST00000585119 83 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 MIR6500-201ENST00000622700 86 ntBASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM35Q9UPQ4 AC068254.2-201ENST00000623938 3577 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-363P-201ENST00000362895 105 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 SNORA57.1-201ENST00000391227 145 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 RNU4-69P-201ENST00000410677 143 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 RPL30P4-201ENST00000429309 333 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 RPS27P22-201ENST00000478056 241 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 RPL21P129-201ENST00000491732 478 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 AC114801.3-201ENST00000510231 177 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 MIR3117-201ENST00000584034 78 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 AC145423.2-201ENST00000610631 239 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 ZNF962P-201ENST00000443465 3140 ntBASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
TRIM35Q9UPQ4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 Y_RNA.95-201ENST00000363079 95 ntBASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-509P-201ENST00000363519 107 ntBASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 Y_RNA.410-201ENST00000383992 113 ntBASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 RNU1-131P-201ENST00000458943 161 ntBASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 RNU7-70P-201ENST00000516941 66 ntBASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 AC073413.2-201ENST00000604332 360 ntBASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 AC087741.2-201ENST00000619415 172 ntBASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.19□□□□□ -1.58
TRIM35Q9UPQ4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 FAM35BP-202ENST00000497389 3337 ntBASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-655P-201ENST00000362858 107 ntBASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-975P-201ENST00000384296 105 ntBASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 SNORA3C-201ENST00000408792 125 ntBASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 RNU2-49P-201ENST00000410666 184 ntBASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 RN7SL271P-201ENST00000487601 295 ntBASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 AC026402.1-201ENST00000513642 170 ntBASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 MIR3683-201ENST00000580847 82 ntBASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM35Q9UPQ4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 MAPK10-320ENST00000641462 6696 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 snoU2_19.1-201ENST00000362361 80 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 RNU6-661P-201ENST00000362409 107 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 SNORD115-19-201ENST00000363098 82 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 SNORD115-18-201ENST00000363293 82 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 RNU1-22P-201ENST00000363334 158 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 Y_RNA.191-201ENST00000363972 113 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 SNORD115-17-201ENST00000364612 82 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 RNU2-35P-201ENST00000516446 142 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 MIR4712-201ENST00000583750 82 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 AC096577.2-201ENST00000611455 153 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 MIR1255B1-201ENST00000636325 63 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 AL592437.2-201ENST00000421655 2434 ntBASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM35Q9UPQ4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 SNORD116-10-201ENST00000363791 102 ntBASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 Y_RNA.242-201ENST00000364473 110 ntBASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 RNU4-67P-201ENST00000364569 141 ntBASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 SCARNA14-201ENST00000516903 136 ntBASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 AC008507.4-201ENST00000585464 127 ntBASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 AC012493.2-201ENST00000595083 291 ntBASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 MIR203B-201ENST00000636080 86 ntBASIC5.16□□□□□ -1.58
TRIM35Q9UPQ4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms