Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.286-201ENST00000364813 102 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 SNORD31B-201ENST00000364977 69 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 RNU6-1318P-201ENST00000365389 103 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.446-201ENST00000384178 104 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 RNU2-54P-201ENST00000410299 190 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 RNA5SP344-201ENST00000411081 104 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 BMS1P22-201ENST00000414726 313 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 RPL32P35-201ENST00000415214 394 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 Z96811.1-201ENST00000445880 108 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 RNA5SP217-201ENST00000515959 91 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 RNU6-965P-201ENST00000516721 96 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 MIR3684-201ENST00000579779 74 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 AC005357.1-201ENST00000588399 301 ntBASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 FAM35CP-201ENST00000554755 2470 ntBASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.383-201ENST00000383855 97 ntBASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.477-201ENST00000384352 108 ntBASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 AC003685.2-201ENST00000422795 395 ntBASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 AC244505.4-201ENST00000434905 287 ntBASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 SSXP5-201ENST00000443473 287 ntBASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 HMGN2P9-201ENST00000476875 229 ntBASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
TRIM39Q9HCM9 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 RNU6-545P-201ENST00000362681 104 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.101-201ENST00000363154 102 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 RNU6-1248P-201ENST00000391096 64 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 AC009963.1-201ENST00000417265 157 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 AL139281.1-201ENST00000422120 335 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 AC024067.1-201ENST00000426199 223 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 AL445687.1-201ENST00000439946 251 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 RPS29P26-201ENST00000477483 171 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 RNU6-388P-201ENST00000517012 105 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 RNU6-389P-201ENST00000517048 105 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 SNORA31.26-201ENST00000517250 137 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 AC055872.1-201ENST00000570978 278 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 MIR3200-201ENST00000580767 85 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 U2.14-201ENST00000615943 113 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.06□□□□□ -1.92
TRIM39Q9HCM9 MIR422A-201ENST00000362286 90 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.20-201ENST00000362479 113 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.54-201ENST00000362766 105 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.60-201ENST00000362831 98 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.515-201ENST00000384535 112 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 MIR548B-201ENST00000385247 97 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 RN7SKP58-201ENST00000411010 305 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 SUMO1P2-201ENST00000452524 304 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 AC091826.1-201ENST00000514065 313 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 AC008885.1-201ENST00000514930 301 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 Y_RNA.673-201ENST00000516306 88 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 RN7SKP282-201ENST00000516824 299 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 RNA5SP490-201ENST00000517141 136 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 BX284668.6-201ENST00000606899 438 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 AC009487.4-201ENST00000624969 3585 ntBASIC3.05□□□□□ -1.92
TRIM39Q9HCM9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 RNU6-1266P-201ENST00000362794 105 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 RNU6-324P-201ENST00000363957 106 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 SNORD27-201ENST00000363981 72 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 MIR23A-201ENST00000385245 73 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 RPL21P3-201ENST00000395517 478 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 AC092427.1-202ENST00000430569 476 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 RNU7-57P-201ENST00000459540 60 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 SNORA74D-201ENST00000516404 141 ntBASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.04□□□□□ -1.92
TRIM39Q9HCM9 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms