Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU6-57P-201ENST00000411348 103 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 ELOCP21-201ENST00000412558 336 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.25□□□□□ -1.89
SF3A1Q15459 Y_RNA.713-201ENST00000517013 96 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.25□□□□□ -1.89
SF3A1Q15459 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.25□□□□□ -1.89
SF3A1Q15459 AC107871.2-201ENST00000612894 502 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
SF3A1Q15459 AC092593.1-201ENST00000515413 1815 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.25□□□□□ -1.89
SF3A1Q15459 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SF3A1Q15459 RNU6-961P-201ENST00000363893 105 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 SNORA80A-201ENST00000363922 136 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 Y_RNA.210-201ENST00000364161 110 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 SNORA72.2-201ENST00000365028 127 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 RNU6-1264P-201ENST00000383891 107 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 RNU6-975P-201ENST00000384296 105 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 RNU6-851P-201ENST00000384565 107 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 AL079342.1-201ENST00000401460 267 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.24□□□□□ -1.89
SF3A1Q15459 AL139109.1-201ENST00000455491 297 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 AC010531.2-201ENST00000465012 153 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 RPS29P26-201ENST00000477483 171 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 SRIP1-201ENST00000489235 288 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.24□□□□□ -1.89
SF3A1Q15459 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.24□□□□□ -1.89
SF3A1Q15459 SNORA9.3-201ENST00000516383 129 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 SNORA40.15-201ENST00000516884 107 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.24□□□□□ -1.89
SF3A1Q15459 AL109918.3-201ENST00000603072 338 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 AL355297.3-201ENST00000604082 446 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 RAC1P9-201ENST00000604990 392 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 AC130454.1-201ENST00000622948 401 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SF3A1Q15459 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.24□□□□□ -1.89
SF3A1Q15459 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SF3A1Q15459 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SF3A1Q15459 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SF3A1Q15459 Y_RNA.459-201ENST00000384251 102 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 RNA5SP475-201ENST00000410568 110 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 RNA5SP270-201ENST00000411361 118 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 AC003982.1-202ENST00000469928 248 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 RPL26P26-201ENST00000480251 434 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 RNU6-948P-201ENST00000516374 107 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SF3A1Q15459 AK6P2-201ENST00000549020 471 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 PART1_1.1-201ENST00000611761 217 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 AC010205.1-201ENST00000616668 449 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.23□□□□□ -1.89
SF3A1Q15459 AC096644.4-201ENST00000563417 2912 ntBASIC3.23□□□□□ -1.89
SF3A1Q15459 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SF3A1Q15459 Y_RNA.153-201ENST00000363615 91 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 RNU1-52P-201ENST00000384190 164 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 RNU6-160P-201ENST00000384591 107 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SF3A1Q15459 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.22□□□□□ -1.89
SF3A1Q15459 TOMM22P2-201ENST00000430735 237 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 NDUFB4P10-201ENST00000452541 359 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.22□□□□□ -1.89
SF3A1Q15459 MRPS35P2-201ENST00000508242 191 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 MIR5194-201ENST00000582634 120 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 MIR3605-201ENST00000583214 100 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 ZNF861P-201ENST00000588126 639 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 AC005176.2-201ENST00000596933 147 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 AL021879.1-201ENST00000611756 288 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 MIR7106-201ENST00000612419 65 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 snoZ196.1-201ENST00000625269 89 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 MIR3674-201ENST00000636576 68 ntBASIC3.22□□□□□ -1.89
SF3A1Q15459 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SF3A1Q15459 RNU6-20P-201ENST00000384106 107 ntBASIC3.21□□□□□ -1.9
SF3A1Q15459 AL139095.1-201ENST00000404326 391 ntBASIC3.21□□□□□ -1.9
SF3A1Q15459 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.21□□□□□ -1.9
SF3A1Q15459 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.21□□□□□ -1.9
SF3A1Q15459 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
SF3A1Q15459 LINC02555-201ENST00000563933 1951 ntBASIC3.21□□□□□ -1.9
SF3A1Q15459 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 MIR26A1-201ENST00000362205 77 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 RNU6-626P-201ENST00000363354 107 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 Y_RNA.143-201ENST00000363520 106 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 SNORA5B-201ENST00000363786 132 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 RNU6-1235P-201ENST00000384559 107 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 RNU6-130P-201ENST00000411112 103 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 AC025750.2-201ENST00000442609 450 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 MTND5P22-201ENST00000458380 195 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 RNU6-498P-201ENST00000459468 107 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 MTATP8P1-201ENST00000467115 207 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.2□□□□□ -1.9
SF3A1Q15459 RNU6-1045P-201ENST00000516321 107 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 RNU2-34P-201ENST00000516534 121 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.2□□□□□ -1.9
SF3A1Q15459 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.2□□□□□ -1.9
SF3A1Q15459 AC116312.1-201ENST00000606841 314 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 AC093732.2-201ENST00000607950 274 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.2□□□□□ -1.9
SF3A1Q15459 AL137790.1-201ENST00000634283 177 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 MIR6733-201ENST00000635723 61 ntBASIC3.2□□□□□ -1.9
SF3A1Q15459 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms