Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXA1P49639 AL355297.2-201ENST00000604792 129 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 AC240442.1-201ENST00000616055 283 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXA1P49639 AC243829.7-201ENST00000633081 225 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
HOXA1P49639 MTND5P35-201ENST00000557537 1720 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HOXA1P49639 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA1P49639 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.09□□□□□ -2.07
HOXA1P49639 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXA1P49639 RNU6-545P-201ENST00000362681 104 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 RNU1-76P-201ENST00000362903 159 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 Y_RNA.179-201ENST00000363844 90 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 RNU4-50P-201ENST00000364361 141 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 RNU6-1145P-201ENST00000384246 107 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 MIR568-201ENST00000385036 95 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA1P49639 AC093852.1-201ENST00000503587 266 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 SNORA40.9-201ENST00000515895 93 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 RNU5F-4P-201ENST00000516581 114 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 RNU6-1198P-201ENST00000516904 67 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 RNU6-897P-201ENST00000517135 105 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 AC034114.1-201ENST00000520293 285 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 AK6P2-201ENST00000549020 471 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.09□□□□□ -2.07
HOXA1P49639 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA1P49639 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA1P49639 AP000553.5-201ENST00000641933 54 ntBASIC2.09□□□□□ -2.07
HOXA1P49639 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXA1P49639 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA1P49639 AL359851.1-201ENST00000569460 4997 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXA1P49639 Y_RNA.64-201ENST00000362845 102 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 Y_RNA.133-201ENST00000363428 110 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 Y_RNA.143-201ENST00000363520 106 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 RNU6-137P-201ENST00000363680 108 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 RNU6-280P-201ENST00000364145 104 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 Y_RNA.214-201ENST00000364201 112 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 Y_RNA.222-201ENST00000364264 102 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 RNA5SP37-201ENST00000365420 130 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 RNU6-793P-201ENST00000384233 104 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 SNORD78.2-201ENST00000391076 69 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 MIR1294-201ENST00000408503 142 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXA1P49639 AC003685.2-201ENST00000422795 395 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 RPL23AP83-201ENST00000434984 473 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 RNU6-408P-201ENST00000515910 100 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 RNY3P15-201ENST00000516297 97 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 Y_RNA.683-201ENST00000516508 93 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 RN7SKP49-201ENST00000516675 260 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 MIR2355-201ENST00000517199 87 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 AC091144.1-201ENST00000519573 138 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA1P49639 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA1P49639 AL117187.1-201ENST00000555482 181 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 AC055872.1-201ENST00000570978 278 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 MIR4448-201ENST00000584360 86 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 ELOCP29-201ENST00000588193 334 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 SNRPGP20-201ENST00000604477 205 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 TCL6_2.1-201ENST00000615162 119 ntBASIC2.08□□□□□ -2.08
HOXA1P49639 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXA1P49639 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
HOXA1P49639 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXA1P49639 MIRLET7G-201ENST00000362280 84 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 SNORA70.4-201ENST00000365509 134 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 RNU6-546P-201ENST00000383991 107 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 Y_RNA.551-201ENST00000384661 102 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 MIR483-201ENST00000385070 76 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 MIR9-1-201ENST00000385198 89 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 RPL21P1-201ENST00000399532 476 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 SNORA11.1-201ENST00000408133 129 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 RNU6-121P-201ENST00000410525 99 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 RNU2-48P-201ENST00000410694 191 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 RNU2-63P-201ENST00000410792 194 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA1P49639 MTND3P2-201ENST00000438452 342 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 DYNLT3P2-201ENST00000442517 295 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA1P49639 RNU7-26P-201ENST00000458980 63 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 RNU7-14P-201ENST00000459331 62 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 RPL26P26-201ENST00000480251 434 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AC098869.1-201ENST00000481627 292 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AC018868.1-201ENST00000491307 315 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AC067942.3-201ENST00000512025 362 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXA1P49639 AC136932.1-201ENST00000574771 208 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AL355297.3-201ENST00000604082 446 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AC025754.2-201ENST00000606491 432 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AC008121.3-201ENST00000618726 433 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 AC012640.5-201ENST00000623897 319 ntBASIC2.07□□□□□ -2.08
HOXA1P49639 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXA1P49639 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXA1P49639 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.06□□□□□ -2.08
HOXA1P49639 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXA1P49639 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.06□□□□□ -2.08
HOXA1P49639 RNU1-112P-201ENST00000364401 164 ntBASIC2.06□□□□□ -2.08
HOXA1P49639 RNU6-234P-201ENST00000365229 104 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 129.5 ms