Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.62□□□□□ -1.83
COL8A1P27658 RPL39P25-201ENST00000449384 154 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 VWA8P1-201ENST00000510889 176 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 AL160290.3-201ENST00000604869 165 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.62□□□□□ -1.83
COL8A1P27658 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.62□□□□□ -1.83
COL8A1P27658 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
COL8A1P27658 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL8A1P27658 AL365361.1-201ENST00000566942 3481 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL8A1P27658 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL8A1P27658 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
COL8A1P27658 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
COL8A1P27658 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL8A1P27658 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL8A1P27658 RNU6-117P-201ENST00000365415 107 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 Y_RNA.437-201ENST00000384113 113 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 MIR493-201ENST00000385254 89 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 RNA5SP354-201ENST00000391247 136 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 MIR1912-201ENST00000410389 80 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 HSPE1P12-201ENST00000412576 301 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 IFNWP4-201ENST00000453148 294 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 RNA5SP57-201ENST00000459463 123 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 AC080013.2-201ENST00000460866 323 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 RPS29P20-201ENST00000489592 171 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 AC097462.1-201ENST00000514125 324 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 AC096725.1-201ENST00000514266 313 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 RN7SKP209-201ENST00000516888 304 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.61□□□□□ -1.83
COL8A1P27658 MIR7975-201ENST00000619350 68 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 MIR3651-201ENST00000630427 90 ntBASIC3.61□□□□□ -1.83
COL8A1P27658 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL8A1P27658 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL8A1P27658 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL8A1P27658 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.61□□□□□ -1.83
COL8A1P27658 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL8A1P27658 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL8A1P27658 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
COL8A1P27658 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL8A1P27658 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
COL8A1P27658 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
COL8A1P27658 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL8A1P27658 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
COL8A1P27658 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL8A1P27658 RNA5SP502-201ENST00000362694 119 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 MIR128-1-201ENST00000384921 82 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.6□□□□□ -1.83
COL8A1P27658 RPS26P28-201ENST00000470806 348 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 AC107626.1-201ENST00000471084 183 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 RPS29P19-201ENST00000479709 171 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 RNU7-61P-201ENST00000515897 61 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 RN7SKP57-201ENST00000517248 293 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.6□□□□□ -1.83
COL8A1P27658 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.6□□□□□ -1.83
COL8A1P27658 RPS15AP11-201ENST00000594193 385 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 HSPE1P7-201ENST00000604681 321 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 U3.45-201ENST00000607547 219 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 RNU6-91P-201ENST00000607774 107 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.6□□□□□ -1.83
COL8A1P27658 AC068254.2-201ENST00000623938 3577 ntBASIC3.6□□□□□ -1.83
COL8A1P27658 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL8A1P27658 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL8A1P27658 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL8A1P27658 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
COL8A1P27658 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.6□□□□□ -1.83
COL8A1P27658 AC058791.1-201ENST00000608412 3198 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.59□□□□□ -1.83
COL8A1P27658 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL8A1P27658 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL8A1P27658 AL133412.1-201ENST00000380194 2992 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.59□□□□□ -1.83
COL8A1P27658 AC004944.1-201ENST00000517807 3059 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 Y_RNA.10-201ENST00000362371 110 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 SNORD24-201ENST00000383884 75 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 RNU1-63P-201ENST00000383902 164 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 AC096949.1-201ENST00000412047 152 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 Z74021.1-201ENST00000423610 407 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 RPL23AP46-201ENST00000438548 490 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 AL353689.1-201ENST00000438895 199 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 AL161651.1-201ENST00000440882 223 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 CYCSP35-201ENST00000451978 304 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 AC104619.4-201ENST00000510773 249 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 RN7SKP83-201ENST00000516512 178 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 HSPE1P18-201ENST00000517602 280 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.59□□□□□ -1.83
COL8A1P27658 AC015912.2-201ENST00000571053 181 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 MIR4513-201ENST00000581077 86 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.59□□□□□ -1.83
COL8A1P27658 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.59□□□□□ -1.83
COL8A1P27658 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 U7.3-201ENST00000616123 62 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.59□□□□□ -1.83
COL8A1P27658 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.59□□□□□ -1.83
COL8A1P27658 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL8A1P27658 AC026241.1-201ENST00000517873 2142 ntBASIC3.59□□□□□ -1.84
COL8A1P27658 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.84
COL8A1P27658 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL8A1P27658 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms