Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 Z75741.1-201ENST00000446793 314 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 RNU7-23P-201ENST00000459465 62 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 RPL23AP62-201ENST00000463396 453 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 AC092991.1-201ENST00000477176 376 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 RPL30P14-201ENST00000482744 348 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 RNU6-561P-201ENST00000516222 102 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 SNORA70.19-201ENST00000516717 90 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 MIR5047-201ENST00000579212 100 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 RNVU1-4-201ENST00000612985 164 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 TUG1_4.1-201ENST00000619464 181 ntBASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
AP4E1Q9UPM8 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AL513302.2-201ENST00000562313 1842 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 RNU6-198P-201ENST00000384258 104 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AL606845.1-201ENST00000404881 255 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AP000567.1-201ENST00000406413 156 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AL139281.1-201ENST00000422120 335 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AL441985.1-201ENST00000457727 251 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 MIR3646-201ENST00000578301 84 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 MIR1254-2-201ENST00000579553 63 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 ZNF702P-202ENST00000434269 1966 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 AC069528.2-201ENST00000624849 1991 ntBASIC3.59□□□□□ -1.83
AP4E1Q9UPM8 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.84
AP4E1Q9UPM8 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.59□□□□□ -1.84
AP4E1Q9UPM8 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.84
AP4E1Q9UPM8 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 AC026241.1-201ENST00000517873 2142 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RNU6-834P-201ENST00000362367 110 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RNU1-57P-201ENST00000384491 166 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RNU6-768P-201ENST00000384683 107 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RNU6-750P-201ENST00000390946 107 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RNU6-1228P-201ENST00000391014 107 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 SNORD37.2-201ENST00000391075 66 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RNU6-460P-201ENST00000391158 108 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 SNORA12-201ENST00000391162 147 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 AC010154.1-201ENST00000425857 269 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 GOT2P5-201ENST00000433995 546 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 AP002884.2-201ENST00000471647 395 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 AC025518.1-201ENST00000479856 347 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RPS27P26-201ENST00000494583 239 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 SNORA70.12-201ENST00000516084 153 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RNU6-659P-201ENST00000516454 104 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RNU6-1231P-201ENST00000517185 103 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 AC002076.2-201ENST00000617362 122 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 AC034229.5-201ENST00000624258 185 ntBASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.58□□□□□ -1.84
AP4E1Q9UPM8 PWAR6-201ENST00000552334 4618 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 MIR367-201ENST00000362299 68 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 Y_RNA.124-201ENST00000363339 93 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 RNY1P11-201ENST00000363759 113 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 RNU6-144P-201ENST00000383951 107 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 MIR184-201ENST00000384962 84 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 RPS29P4-201ENST00000414733 161 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 ARF4P2-201ENST00000430209 526 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 RN7SL330P-201ENST00000469709 307 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 SRIP1-201ENST00000489235 288 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 MIR3186-201ENST00000577404 85 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 MIR4724-201ENST00000579485 89 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 MIR4425-201ENST00000580572 84 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 MIR3922-201ENST00000585192 84 ntBASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.57□□□□□ -1.84
AP4E1Q9UPM8 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
AP4E1Q9UPM8 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
AP4E1Q9UPM8 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.56□□□□□ -1.84
AP4E1Q9UPM8 snoU2_19.1-201ENST00000362361 80 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms