Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC007536.1-201ENST00000533382 349 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.56□□□□□ -2
PAAF1Q9BRP4 AC023824.2-201ENST00000566185 400 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 AC022432.1-201ENST00000595739 310 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 AC078899.3-201ENST00000599065 212 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 AC124312.5-201ENST00000604451 268 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PAAF1Q9BRP4 MTND5P6-201ENST00000422338 1798 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.55□□□□□ -2
PAAF1Q9BRP4 SNORD32B-201ENST00000364460 84 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 RNU6-281P-201ENST00000384212 103 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 RNU6-1026P-201ENST00000384465 108 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 Y_RNA.527-201ENST00000384573 102 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 RN7SKP223-201ENST00000410582 62 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 RNU2-25P-201ENST00000411041 191 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 RPS29P21-201ENST00000496272 170 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 SNORA48.11-201ENST00000517015 89 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 CBX3P7-201ENST00000532876 502 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 AL442163.3-201ENST00000554110 156 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 RPL17P51-201ENST00000605218 238 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.55□□□□□ -2
PAAF1Q9BRP4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 AL162373.1-201ENST00000620433 407 ntBASIC2.55□□□□□ -2
PAAF1Q9BRP4 AC016717.2-201ENST00000609089 5141 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
PAAF1Q9BRP4 RNU6-1301P-201ENST00000362724 104 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 SNORA38-201ENST00000363946 132 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 RNU6-743P-201ENST00000364151 106 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 MIR95-201ENST00000385072 81 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 AL033519.2-201ENST00000403958 392 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 RNU6-1001P-201ENST00000411265 100 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 AL121890.1-201ENST00000435457 205 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 AC010095.1-201ENST00000443543 144 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 AC112492.4-201ENST00000456549 352 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 RNU7-26P-201ENST00000458980 63 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.54□□□□□ -2
PAAF1Q9BRP4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.54□□□□□ -2
PAAF1Q9BRP4 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 AC040926.1-201ENST00000530195 238 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 HSPE1P20-201ENST00000538133 289 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
PAAF1Q9BRP4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.54□□□□□ -2
PAAF1Q9BRP4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
PAAF1Q9BRP4 MIR6733-201ENST00000635723 61 ntBASIC2.54□□□□□ -2
PAAF1Q9BRP4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
PAAF1Q9BRP4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.54□□□□□ -2
PAAF1Q9BRP4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
PAAF1Q9BRP4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.53□□□□□ -2
PAAF1Q9BRP4 Z82209.1-201ENST00000422141 2135 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.53□□□□□ -2
PAAF1Q9BRP4 Y_RNA.27-201ENST00000362540 103 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 RNU1-23P-201ENST00000363361 144 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 RNU6-450P-201ENST00000364654 107 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 RNU6-234P-201ENST00000365229 104 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 RNU6-793P-201ENST00000384233 104 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 RNU6-1160P-201ENST00000384546 104 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.53□□□□□ -2
PAAF1Q9BRP4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.53□□□□□ -2
PAAF1Q9BRP4 Y_RNA.595-201ENST00000410403 105 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 AC007064.1-201ENST00000412238 351 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.53□□□□□ -2
PAAF1Q9BRP4 RNU7-14P-201ENST00000459331 62 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 YWHAEP4-201ENST00000505390 198 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 RNU1-117P-201ENST00000517041 158 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 AC022616.8-201ENST00000533569 253 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 MIR4680-201ENST00000580906 66 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 MIR6715A-201ENST00000615929 79 ntBASIC2.53□□□□□ -2
PAAF1Q9BRP4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.53□□□□□ -2
PAAF1Q9BRP4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNA5SP361-201ENST00000362686 118 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNU6-727P-201ENST00000363592 107 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNU4-50P-201ENST00000364361 141 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNU6-926P-201ENST00000384075 107 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNU6-708P-201ENST00000384217 107 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNY3P4-201ENST00000384428 101 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 SNORD78.2-201ENST00000391076 69 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 Y_RNA.645-201ENST00000391229 102 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AC009237.7-201ENST00000447357 229 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNU6-327P-201ENST00000516270 127 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNU6-764P-201ENST00000516396 105 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 Y_RNA.683-201ENST00000516508 93 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 RNU6-1098P-201ENST00000516772 96 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AC022616.4-201ENST00000522985 181 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AC018630.3-201ENST00000542637 96 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AC125232.2-201ENST00000592457 143 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AL390123.1-201ENST00000603216 237 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AC104695.3-201ENST00000604052 296 ntBASIC2.52□□□□□ -2.01
PAAF1Q9BRP4 AL360085.1-201ENST00000604713 532 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 216.6 ms