Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SNORA31.15-201ENST00000516771 132 ntBASIC2.85□□□□□ -1.95
HPS3Q969F9 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.85□□□□□ -1.95
HPS3Q969F9 AC022616.4-201ENST00000522985 181 ntBASIC2.85□□□□□ -1.95
HPS3Q969F9 AC040926.1-201ENST00000530195 238 ntBASIC2.85□□□□□ -1.95
HPS3Q969F9 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.85□□□□□ -1.95
HPS3Q969F9 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.85□□□□□ -1.95
HPS3Q969F9 AL162373.1-201ENST00000620433 407 ntBASIC2.85□□□□□ -1.95
HPS3Q969F9 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HPS3Q969F9 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HPS3Q969F9 AC062016.1-201ENST00000355719 319 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 RNU1-76P-201ENST00000362903 159 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 Y_RNA.162-201ENST00000363683 102 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 SNORA38-201ENST00000363946 132 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 RNU4-50P-201ENST00000364361 141 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 RNU6-1026P-201ENST00000384465 108 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 RNU6-1160P-201ENST00000384546 104 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HPS3Q969F9 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.84□□□□□ -1.95
HPS3Q969F9 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.84□□□□□ -1.95
HPS3Q969F9 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.84□□□□□ -1.95
HPS3Q969F9 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.84□□□□□ -1.95
HPS3Q969F9 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.84□□□□□ -1.95
HPS3Q969F9 Y_RNA.683-201ENST00000516508 93 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 RNU6-344P-201ENST00000516635 111 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 RN7SKP49-201ENST00000516675 260 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 RNU6-1098P-201ENST00000516772 96 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 CBX3P7-201ENST00000532876 502 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 MIR4680-201ENST00000580906 66 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 MIR3945-201ENST00000581853 98 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 AC125232.2-201ENST00000592457 143 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 AC124312.5-201ENST00000604451 268 ntBASIC2.84□□□□□ -1.95
HPS3Q969F9 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
HPS3Q969F9 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
HPS3Q969F9 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
HPS3Q969F9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
HPS3Q969F9 RNU6-859P-201ENST00000362728 107 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 RNU1-138P-201ENST00000384093 164 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 SNORD78.2-201ENST00000391076 69 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 RNU6-1001P-201ENST00000411265 100 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 AC009238.1-201ENST00000442165 424 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 AC010095.1-201ENST00000443543 144 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 AC009237.6-201ENST00000446969 424 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.83□□□□□ -1.96
HPS3Q969F9 RNU7-26P-201ENST00000458980 63 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 RNU7-14P-201ENST00000459331 62 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.83□□□□□ -1.96
HPS3Q969F9 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.83□□□□□ -1.96
HPS3Q969F9 DEFB131C-201ENST00000528817 165 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 AL390123.1-201ENST00000603216 237 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 AC104695.3-201ENST00000604052 296 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 SNORD11B-201ENST00000607707 90 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 AC010297.1-201ENST00000623948 149 ntBASIC2.83□□□□□ -1.96
HPS3Q969F9 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.83□□□□□ -1.96
HPS3Q969F9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.82□□□□□ -1.96
HPS3Q969F9 MTND5P35-201ENST00000557537 1720 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 SNORA63.7-201ENST00000365579 123 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 Y_RNA.455-201ENST00000384230 98 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 MIR329-1-201ENST00000385028 80 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 Y_RNA.645-201ENST00000391229 102 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 AL033519.2-201ENST00000403958 392 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 AL357139.1-201ENST00000407792 426 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 OOSP1P1-201ENST00000423265 274 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.82□□□□□ -1.96
HPS3Q969F9 AL118496.2-201ENST00000448300 230 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 MIR3670-2-201ENST00000582974 65 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 MIR3670-1-201ENST00000584160 65 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 MIR3670-3-201ENST00000584855 65 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 MIR3670-4-201ENST00000612260 65 ntBASIC2.82□□□□□ -1.96
HPS3Q969F9 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HPS3Q969F9 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HPS3Q969F9 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
HPS3Q969F9 RNA5SP361-201ENST00000362686 118 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 Y_RNA.380-201ENST00000365663 111 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 RNU6-1145P-201ENST00000384246 107 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 RNU6-611P-201ENST00000384276 104 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 RNU6-318P-201ENST00000384283 103 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 Y_RNA.527-201ENST00000384573 102 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 MIR196B-201ENST00000384852 84 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 RNU6-823P-201ENST00000391042 103 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 RNU6-985P-201ENST00000410182 104 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 SNORD12B-201ENST00000410433 91 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 RNA5SP508-201ENST00000411327 119 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 SDAD1P3-201ENST00000427380 333 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 FCF1P4-201ENST00000448326 183 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 AC007395.1-201ENST00000451333 677 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 AL109933.2-201ENST00000452651 260 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.81□□□□□ -1.96
HPS3Q969F9 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.81□□□□□ -1.96
HPS3Q969F9 RNU6-764P-201ENST00000516396 105 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.81□□□□□ -1.96
HPS3Q969F9 AL049779.4-201ENST00000604500 156 ntBASIC2.81□□□□□ -1.96
HPS3Q969F9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HPS3Q969F9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
HPS3Q969F9 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.8□□□□□ -1.96
HPS3Q969F9 RNU4-82P-201ENST00000362443 140 ntBASIC2.8□□□□□ -1.96
HPS3Q969F9 RNU6-743P-201ENST00000364151 106 ntBASIC2.8□□□□□ -1.96
HPS3Q969F9 SNORA25B-201ENST00000365507 128 ntBASIC2.8□□□□□ -1.96
HPS3Q969F9 RNU6-438P-201ENST00000365561 103 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms