Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 RNA5SP239-201ENST00000410218 129 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 RPS4XP11-201ENST00000446897 772 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 RPS26P28-201ENST00000470806 348 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 RPS27P22-201ENST00000478056 241 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 AC106707.2-201ENST00000484182 374 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 RN7SKP46-201ENST00000515942 234 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 RNU6-504P-201ENST00000516568 104 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 AC007751.1-201ENST00000529260 376 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.27□□□□□ -1.73
HLA-CQ95604 AC103810.1-201ENST00000579873 453 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 LINC00901.1-201ENST00000617252 152 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 AL672167.1-204ENST00000641875 3017 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 AL353746.1-201ENST00000566293 6881 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 MFSD8-236ENST00000641509 4050 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 AC103988.1-201ENST00000566382 2177 ntBASIC4.27□□□□□ -1.73
HLA-CQ95604 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-CQ95604 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-CQ95604 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-CQ95604 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.26□□□□□ -1.73
HLA-CQ95604 DHX9P1-201ENST00000436565 3076 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-CQ95604 Y_RNA.85-201ENST00000363014 111 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 RNU1-22P-201ENST00000363334 158 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 RNU6-1209P-201ENST00000363655 107 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 Y_RNA.242-201ENST00000364473 110 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 SNORD72-201ENST00000390994 80 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 MIR1179-201ENST00000408703 91 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 RNU6-554P-201ENST00000410466 106 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 RNA5SP38-201ENST00000410750 119 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 AL035423.1-201ENST00000420331 213 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 TRBV25OR9-2-201ENST00000438417 374 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 AC093663.1-201ENST00000497190 394 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 AC097462.1-201ENST00000514125 324 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 RNA5SP236-201ENST00000516169 116 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 JPX_2.1-201ENST00000614161 69 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 MIR3651-201ENST00000630427 90 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 AC027290.2-201ENST00000623210 18662 ntBASIC4.26□□□□□ -1.73
HLA-CQ95604 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-CQ95604 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-CQ95604 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
HLA-CQ95604 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-CQ95604 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-CQ95604 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HLA-CQ95604 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HLA-CQ95604 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.25□□□□□ -1.73
HLA-CQ95604 SNORA12.1-201ENST00000390873 148 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 RNA5SP104-201ENST00000410989 118 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 AC080013.2-201ENST00000460866 323 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 COX6CP6-201ENST00000490840 228 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 AC104619.4-201ENST00000510773 249 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 RPL23AP94-201ENST00000512518 302 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 RN7SKP57-201ENST00000517248 293 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 AC027419.1-201ENST00000522976 328 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-CQ95604 AC007012.1-201ENST00000567192 175 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 AC087499.8-201ENST00000578406 226 ntBASIC4.25□□□□□ -1.73
HLA-CQ95604 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-CQ95604 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-CQ95604 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.25□□□□□ -1.73
HLA-CQ95604 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-CQ95604 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.25□□□□□ -1.73
HLA-CQ95604 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-CQ95604 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.25□□□□□ -1.73
HLA-CQ95604 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.24□□□□□ -1.73
HLA-CQ95604 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
HLA-CQ95604 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 RNU1-105P-201ENST00000363470 161 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 RNA5SP125-201ENST00000364843 120 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 RNA5SP97-201ENST00000365006 84 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 Y_RNA.500-201ENST00000384466 111 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 Y_RNA.528-201ENST00000384575 108 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 BX510359.1-201ENST00000456973 237 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 RPS29P21-201ENST00000496272 170 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 AC011604.1-201ENST00000545978 196 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 MIR5684-201ENST00000585074 65 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 MIR3922-201ENST00000585192 84 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 AC090517.3-201ENST00000625170 141 ntBASIC4.24□□□□□ -1.73
HLA-CQ95604 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-CQ95604 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-CQ95604 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HLA-CQ95604 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HLA-CQ95604 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HLA-CQ95604 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-CQ95604 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-CQ95604 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-CQ95604 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-CQ95604 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.23□□□□□ -1.73
HLA-CQ95604 RNU6-508P-201ENST00000363231 103 ntBASIC4.23□□□□□ -1.73
HLA-CQ95604 Y_RNA.348-201ENST00000365403 103 ntBASIC4.23□□□□□ -1.73
HLA-CQ95604 Y_RNA.486-201ENST00000384398 107 ntBASIC4.23□□□□□ -1.73
HLA-CQ95604 RNU6-905P-201ENST00000384434 107 ntBASIC4.23□□□□□ -1.73
HLA-CQ95604 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 141.9 ms