Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-26P-201ENST00000383985 107 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 SNORD63-201ENST00000384262 68 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 Y_RNA.462-201ENST00000384268 102 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-1274P-201ENST00000384557 107 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 MIR1294-201ENST00000408503 142 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 Y_RNA.597-201ENST00000410463 100 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 AC004386.2-201ENST00000441858 148 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 DYNLT3P2-201ENST00000442517 295 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 AC108938.1-201ENST00000451204 136 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 RNY3P15-201ENST00000516297 97 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 AL161670.1-201ENST00000554348 137 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 MYL12BP1-201ENST00000569826 507 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 MIR4513-201ENST00000581077 86 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 AC023043.3-201ENST00000593113 385 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 MIR8062-201ENST00000621515 85 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 LINC02555-201ENST00000563933 1951 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 Y_RNA.19-201ENST00000362462 99 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 SNORA18.2-201ENST00000383865 132 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AL079342.1-201ENST00000401460 267 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 RPL19P1-201ENST00000411635 428 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AL445305.1-201ENST00000432577 575 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AL161788.1-201ENST00000441805 169 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 IPO7P1-201ENST00000442031 636 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 LINC01399-202ENST00000458450 244 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AC091179.3-201ENST00000474761 144 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 RPL26P26-201ENST00000480251 434 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 SNORA40.9-201ENST00000515895 93 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-397P-201ENST00000516226 104 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 MIR5006-201ENST00000583027 110 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AL356280.1-201ENST00000603614 379 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 MZT1P2-201ENST00000604387 248 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AL449363.1-201ENST00000617815 186 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 AL136360.1-201ENST00000503377 1900 ntBASIC2.66□□□□□ -1.98
PTCHD3Q3KNS1 Z82195.2-201ENST00000612348 18351 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 AC062016.1-201ENST00000355719 319 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-713P-201ENST00000384761 107 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 MIR549A-201ENST00000385268 96 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 SNORD115-46-201ENST00000390982 71 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 SNORA12-201ENST00000391162 147 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 AL138827.1-201ENST00000402666 306 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 FO393413.1-201ENST00000402892 195 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 RNU2-52P-201ENST00000410680 190 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 RNA5SP184-201ENST00000411071 108 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 RNA5SP492-201ENST00000411330 114 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 IFNA11P-201ENST00000446352 526 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 SNORD109B-201ENST00000458961 67 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 SNORD109A-201ENST00000459128 67 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 RPS23P5-201ENST00000495419 428 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 DEFB131C-201ENST00000528817 165 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 AC023824.2-201ENST00000566185 400 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 MIR3149-201ENST00000584629 83 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
PTCHD3Q3KNS1 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.193-201ENST00000363979 102 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.230-201ENST00000364348 109 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 RNU1-112P-201ENST00000364401 164 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 MIR627-201ENST00000384979 97 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 RNU5A-5P-201ENST00000411054 116 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 AC003685.2-201ENST00000422795 395 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 AL109933.2-201ENST00000452651 260 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 AC090515.1-201ENST00000465295 476 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 AK6P2-201ENST00000549020 471 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 SNORD11B-201ENST00000607707 90 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 AC011476.5-201ENST00000615594 130 ntBASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 U6.104-201ENST00000637979 90 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 176.3 ms