Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-1098P-201ENST00000516772 96 ntBASIC3.56□□□□□ -1.84
LIG3P49916 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.56□□□□□ -1.84
LIG3P49916 MIR3133-201ENST00000583157 78 ntBASIC3.56□□□□□ -1.84
LIG3P49916 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.56□□□□□ -1.84
LIG3P49916 MIR7851-201ENST00000610611 160 ntBASIC3.56□□□□□ -1.84
LIG3P49916 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.56□□□□□ -1.84
LIG3P49916 AL078604.3-201ENST00000615580 211 ntBASIC3.56□□□□□ -1.84
LIG3P49916 AC012314.7-201ENST00000619693 93 ntBASIC3.56□□□□□ -1.84
LIG3P49916 U4.6-201ENST00000621618 127 ntBASIC3.56□□□□□ -1.84
LIG3P49916 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIG3P49916 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIG3P49916 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.56□□□□□ -1.84
LIG3P49916 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.56□□□□□ -1.84
LIG3P49916 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.55□□□□□ -1.84
LIG3P49916 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.55□□□□□ -1.84
LIG3P49916 HMGB3P3-201ENST00000510526 400 ntBASIC3.55□□□□□ -1.84
LIG3P49916 RAC1P5-201ENST00000512182 576 ntBASIC3.55□□□□□ -1.84
LIG3P49916 RNU6-579P-201ENST00000516879 102 ntBASIC3.55□□□□□ -1.84
LIG3P49916 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.55□□□□□ -1.84
LIG3P49916 AP003355.3-201ENST00000623465 114 ntBASIC3.55□□□□□ -1.84
LIG3P49916 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIG3P49916 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIG3P49916 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIG3P49916 SNORA51.4-201ENST00000364993 124 ntBASIC3.54□□□□□ -1.84
LIG3P49916 CD24P4-201ENST00000382840 243 ntBASIC3.54□□□□□ -1.84
LIG3P49916 RNU6-1027P-201ENST00000383998 107 ntBASIC3.54□□□□□ -1.84
LIG3P49916 RNU6-763P-201ENST00000390865 106 ntBASIC3.54□□□□□ -1.84
LIG3P49916 AC074290.1-201ENST00000448883 135 ntBASIC3.54□□□□□ -1.84
LIG3P49916 Y_RNA.637-201ENST00000459424 114 ntBASIC3.54□□□□□ -1.84
LIG3P49916 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.54□□□□□ -1.84
LIG3P49916 HMGN2P9-201ENST00000476875 229 ntBASIC3.54□□□□□ -1.84
LIG3P49916 AC136628.3-201ENST00000521868 290 ntBASIC3.54□□□□□ -1.84
LIG3P49916 MIR3684-201ENST00000579779 74 ntBASIC3.54□□□□□ -1.84
LIG3P49916 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.54□□□□□ -1.84
LIG3P49916 U6.115-201ENST00000636045 103 ntBASIC3.54□□□□□ -1.84
LIG3P49916 U6.105-201ENST00000637379 88 ntBASIC3.54□□□□□ -1.84
LIG3P49916 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.54□□□□□ -1.84
LIG3P49916 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LIG3P49916 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
LIG3P49916 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LIG3P49916 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LIG3P49916 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LIG3P49916 AL049781.1-201ENST00000623195 3585 ntBASIC3.53□□□□□ -1.84
LIG3P49916 MAPK10-362ENST00000641864 4484 ntBASIC3.53□□□□□ -1.84
LIG3P49916 SNORA63.1-201ENST00000362493 131 ntBASIC3.53□□□□□ -1.84
LIG3P49916 RNU4-17P-201ENST00000365598 141 ntBASIC3.53□□□□□ -1.84
LIG3P49916 Y_RNA.506-201ENST00000384494 102 ntBASIC3.53□□□□□ -1.84
LIG3P49916 RNU6-1274P-201ENST00000384557 107 ntBASIC3.53□□□□□ -1.84
LIG3P49916 MIR183-201ENST00000384958 110 ntBASIC3.53□□□□□ -1.84
LIG3P49916 MIR300-201ENST00000401138 83 ntBASIC3.53□□□□□ -1.84
LIG3P49916 AL357075.1-201ENST00000404107 726 ntBASIC3.53□□□□□ -1.84
LIG3P49916 CYCSP35-201ENST00000451978 304 ntBASIC3.53□□□□□ -1.84
LIG3P49916 AC091021.1-201ENST00000468051 388 ntBASIC3.53□□□□□ -1.84
LIG3P49916 RPS29P2-201ENST00000479278 136 ntBASIC3.53□□□□□ -1.84
LIG3P49916 AC083906.5-201ENST00000503722 328 ntBASIC3.53□□□□□ -1.84
LIG3P49916 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.53□□□□□ -1.84
LIG3P49916 SNORA70.12-201ENST00000516084 153 ntBASIC3.53□□□□□ -1.84
LIG3P49916 RNU6-1219P-201ENST00000516143 112 ntBASIC3.53□□□□□ -1.84
LIG3P49916 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.53□□□□□ -1.84
LIG3P49916 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.53□□□□□ -1.84
LIG3P49916 MRPS18CP4-201ENST00000535821 231 ntBASIC3.53□□□□□ -1.84
LIG3P49916 AC084757.4-201ENST00000616350 526 ntBASIC3.53□□□□□ -1.84
LIG3P49916 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.53□□□□□ -1.84
LIG3P49916 AC008264.2-201ENST00000610193 3731 ntBASIC3.53□□□□□ -1.84
LIG3P49916 AP003122.5-201ENST00000527668 3766 ntBASIC3.53□□□□□ -1.84
LIG3P49916 RNA5SP50-201ENST00000363731 107 ntBASIC3.52□□□□□ -1.85
LIG3P49916 Y_RNA.287-201ENST00000364853 94 ntBASIC3.52□□□□□ -1.85
LIG3P49916 MIR490-201ENST00000384865 128 ntBASIC3.52□□□□□ -1.85
LIG3P49916 RPL21P3-201ENST00000395517 478 ntBASIC3.52□□□□□ -1.85
LIG3P49916 U3.39-201ENST00000408569 239 ntBASIC3.52□□□□□ -1.85
LIG3P49916 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
LIG3P49916 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.52□□□□□ -1.85
LIG3P49916 PRSS3P4-201ENST00000453323 162 ntBASIC3.52□□□□□ -1.85
LIG3P49916 RNU7-14P-201ENST00000459331 62 ntBASIC3.52□□□□□ -1.85
LIG3P49916 AC146507.2-201ENST00000460608 476 ntBASIC3.52□□□□□ -1.85
LIG3P49916 AC114982.1-201ENST00000469402 321 ntBASIC3.52□□□□□ -1.85
LIG3P49916 AC025518.1-201ENST00000479856 347 ntBASIC3.52□□□□□ -1.85
LIG3P49916 RNA5SP385-201ENST00000515947 110 ntBASIC3.52□□□□□ -1.85
LIG3P49916 AC026333.2-201ENST00000542164 106 ntBASIC3.52□□□□□ -1.85
LIG3P49916 MIR3944-201ENST00000581277 108 ntBASIC3.52□□□□□ -1.85
LIG3P49916 MIR4753-201ENST00000585119 83 ntBASIC3.52□□□□□ -1.85
LIG3P49916 AL133393.1-201ENST00000603277 287 ntBASIC3.52□□□□□ -1.85
LIG3P49916 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
LIG3P49916 AL356274.2-201ENST00000624379 3752 ntBASIC3.52□□□□□ -1.85
LIG3P49916 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.52□□□□□ -1.85
LIG3P49916 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.52□□□□□ -1.85
LIG3P49916 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
LIG3P49916 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.52□□□□□ -1.85
LIG3P49916 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LIG3P49916 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LIG3P49916 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LIG3P49916 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
LIG3P49916 AC010329.5-201ENST00000623497 2174 ntBASIC3.51□□□□□ -1.85
LIG3P49916 RNU6-801P-201ENST00000364087 105 ntBASIC3.51□□□□□ -1.85
LIG3P49916 RNU6-187P-201ENST00000384139 106 ntBASIC3.51□□□□□ -1.85
LIG3P49916 RNU6-125P-201ENST00000384505 107 ntBASIC3.51□□□□□ -1.85
LIG3P49916 Y_RNA.571-201ENST00000384753 98 ntBASIC3.51□□□□□ -1.85
LIG3P49916 MIR1283-1-201ENST00000408494 87 ntBASIC3.51□□□□□ -1.85
LIG3P49916 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.51□□□□□ -1.85
LIG3P49916 RNU6-855P-201ENST00000410395 104 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 148.8 ms