Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC021146.4-201ENST00000309229 279 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 SNORA7.2-201ENST00000364446 145 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 SNORD45B-201ENST00000364617 72 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RNU1-63P-201ENST00000383902 164 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6-1189P-201ENST00000383958 107 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6-409P-201ENST00000384114 104 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RNU2-49P-201ENST00000410666 184 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RPS12P10-201ENST00000427031 377 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 AC010099.1-201ENST00000455434 375 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RPS29P22-201ENST00000472363 168 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RN7SL459P-201ENST00000481078 302 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6-948P-201ENST00000516374 107 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 AC134698.5-201ENST00000519444 336 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 TRAV8-5-201ENST00000537369 341 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 MIR4438-201ENST00000585271 93 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 YPEL5P2-201ENST00000605553 359 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 AC017071.1-201ENST00000564407 2204 ntBASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AC006504.1-201ENST00000562493 3666 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.4-201ENST00000362333 112 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 RNU1-94P-201ENST00000362627 173 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6-363P-201ENST00000362895 105 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.565-201ENST00000384719 101 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 HDGFP1-201ENST00000405943 252 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6-887P-201ENST00000410660 100 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AC092017.2-201ENST00000427600 362 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 RPS12P18-201ENST00000442381 270 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6-1096P-201ENST00000517089 102 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6-1231P-201ENST00000517185 103 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 MIR3618-201ENST00000580330 88 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 MIR3683-201ENST00000580847 82 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AC008745.1-201ENST00000604064 271 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AL672167.1-203ENST00000641299 2975 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AC022893.2-201ENST00000564832 3296 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AL133243.3-201ENST00000617415 3004 ntBASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS9D1Q9Y2B5 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 RNA5SP307-201ENST00000362863 116 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 RNY1P4-201ENST00000384595 115 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 MIR141-201ENST00000384975 95 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.607-201ENST00000410597 98 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 SNORA74C-2-201ENST00000411179 201 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 AC011753.3-201ENST00000443436 406 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 RN7SL738P-201ENST00000470264 297 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 FAM27D1-201ENST00000612308 341 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 AC087741.2-201ENST00000619415 172 ntBASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS9D1Q9Y2B5 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
VPS9D1Q9Y2B5 OR56B2P-202ENST00000641377 2453 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 MFSD8-216ENST00000641147 4009 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 RNA5SP151-201ENST00000365632 117 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 AC023141.4-201ENST00000412031 328 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 RPL23AP93-201ENST00000440847 484 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 AC023141.12-201ENST00000512399 199 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 RNU2-35P-201ENST00000516446 142 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 AC008739.2-201ENST00000597006 317 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 MIR378J-201ENST00000611988 109 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 AP005019.3-201ENST00000620418 560 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 AC007546.2-201ENST00000623996 360 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 AC112200.1-201ENST00000625015 234 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 AC091304.10-201ENST00000641554 121 ntBASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS9D1Q9Y2B5 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms