Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 RNU2-38P-201ENST00000410856 79 ntBASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 ELOCP21-201ENST00000412558 336 ntBASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 AL353705.1-201ENST00000433468 480 ntBASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 MTND4LP30-201ENST00000454092 297 ntBASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 RN7SL504P-201ENST00000494496 287 ntBASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 SDR42E1P4-201ENST00000620894 481 ntBASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 AC006001.4-201ENST00000622243 395 ntBASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 AC000403.1-201ENST00000613696 3585 ntBASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
TRIM39Q9HCM9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
TRIM39Q9HCM9 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
TRIM39Q9HCM9 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 RNU6-944P-201ENST00000364023 107 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.447-201ENST00000384184 113 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.478-201ENST00000384358 107 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 MIR300-201ENST00000401138 83 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 SNORA11.1-201ENST00000408133 129 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 AC004866.1-201ENST00000411748 78 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 AC005042.3-201ENST00000453230 174 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 RN7SL863P-201ENST00000462370 296 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 AC114982.1-201ENST00000469402 321 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 RNA5SP385-201ENST00000515947 110 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 RNU6-1098P-201ENST00000516772 96 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 SNORA70.24-201ENST00000517233 118 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 RN7SKP57-201ENST00000517248 293 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 AC004832.5-201ENST00000608677 401 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 uc_338.25-201ENST00000613756 156 ntBASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
TRIM39Q9HCM9 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 U3.8-201ENST00000363675 217 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 RNU6-234P-201ENST00000365229 104 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.331-201ENST00000365267 102 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.562-201ENST00000384695 113 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 MIR586-201ENST00000385035 97 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 MIR887-201ENST00000401258 79 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 RNU4-30P-201ENST00000410245 143 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AC139712.2-201ENST00000424302 339 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 TOMM22P2-201ENST00000430735 237 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AC115115.1-201ENST00000449927 248 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 EEF1B2P7-201ENST00000451177 676 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 NDUFB4P10-201ENST00000452541 359 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 RNU7-14P-201ENST00000459331 62 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AC090515.1-201ENST00000465295 476 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 SRIP1-201ENST00000489235 288 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AC107222.1-201ENST00000510899 637 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 RNU6-1338P-201ENST00000516328 91 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 SCARNA20.6-201ENST00000517251 106 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 DEFB108E-201ENST00000524692 240 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AC006380.1-201ENST00000603598 186 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AP001282.2-201ENST00000616149 309 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 MIR8057-201ENST00000620957 69 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 AC008873.1-201ENST00000625051 138 ntBASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
TRIM39Q9HCM9 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 MIR410-201ENST00000362222 80 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 RNU6-461P-201ENST00000364195 107 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.237-201ENST00000364439 102 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 RNU6-546P-201ENST00000383991 107 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 SNORA7.4-201ENST00000384249 137 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.541-201ENST00000384640 113 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 RN7SKP220-201ENST00000410611 288 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 AC104332.2-201ENST00000429959 156 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 HSPE1P25-201ENST00000455484 251 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 AC104027.1-201ENST00000521887 300 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 MIR4753-201ENST00000585119 83 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 AL356280.1-201ENST00000603614 379 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 AL161756.2-201ENST00000604597 246 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 AC022441.3-201ENST00000605737 136 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 AC004467.1-201ENST00000615678 330 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 MIR622-201ENST00000638396 96 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 AC093010.3-201ENST00000570269 15214 ntBASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.13□□□□□ -1.91
TRIM39Q9HCM9 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms