Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC144BQ3MJ40 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC144BQ3MJ40 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.32□□□□□ -1.88
CCDC144BQ3MJ40 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC144BQ3MJ40 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC144BQ3MJ40 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 SNORA63.7-201ENST00000365579 123 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 RNU6-1145P-201ENST00000384246 107 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 Y_RNA.485-201ENST00000384395 102 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 MIR329-1-201ENST00000385028 80 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 MIR549A-201ENST00000385268 96 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 SNORD78.2-201ENST00000391076 69 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 SNORA26.7-201ENST00000391288 122 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 AL445305.1-201ENST00000432577 575 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 AL109933.2-201ENST00000452651 260 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 RNU7-14P-201ENST00000459331 62 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 MIR449C-201ENST00000516047 92 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 RNU6-965P-201ENST00000516721 96 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 DEFB131C-201ENST00000528817 165 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 AC040926.1-201ENST00000530195 238 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 AC116312.1-201ENST00000606841 314 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 AC099654.10-201ENST00000640395 161 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 ZNF72P-201ENST00000425869 1908 ntBASIC3.31□□□□□ -1.88
CCDC144BQ3MJ40 MTND5P35-201ENST00000557537 1720 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 Y_RNA.380-201ENST00000365663 111 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 Y_RNA.389-201ENST00000383924 113 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 MIR181A2-201ENST00000384863 110 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 RNU6-1001P-201ENST00000411265 100 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 SDAD1P3-201ENST00000427380 333 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 AC087499.2-201ENST00000432861 149 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 AC074133.1-201ENST00000515696 183 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 Y_RNA.713-201ENST00000517013 96 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 AC107016.2-201ENST00000547968 190 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 MIR3124-201ENST00000582636 67 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 AL390123.1-201ENST00000603216 237 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 AC124312.5-201ENST00000604451 268 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 AC096644.4-201ENST00000563417 2912 ntBASIC3.3□□□□□ -1.88
CCDC144BQ3MJ40 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 MTND4P1-201ENST00000457501 1466 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 SNORD31B-201ENST00000364977 69 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 RNU6-318P-201ENST00000384283 103 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 SNORA51.11-201ENST00000384442 131 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 RNU6-1160P-201ENST00000384546 104 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 AC010095.1-201ENST00000443543 144 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 IFNA11P-201ENST00000446352 526 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 FCF1P4-201ENST00000448326 183 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 AC074290.1-201ENST00000448883 135 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 AC091179.3-201ENST00000474761 144 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 RNU6-667P-201ENST00000517186 102 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 MIR4680-201ENST00000580906 66 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 AL121655.1-201ENST00000605811 308 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 AL162373.1-201ENST00000620433 407 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 MIR1248-201ENST00000629190 106 ntBASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC144BQ3MJ40 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AC009487.2-201ENST00000420969 6821 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 RNU6-438P-201ENST00000365561 103 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 Y_RNA.455-201ENST00000384230 98 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 Y_RNA.551-201ENST00000384661 102 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 MIR606-201ENST00000384851 96 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AL033519.2-201ENST00000403958 392 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 SNORD12B-201ENST00000410433 91 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AC063976.3-201ENST00000426849 329 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 PCNPP5-201ENST00000452246 481 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AC114982.1-201ENST00000469402 321 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AC034114.1-201ENST00000520293 285 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 NDUFA5P6-201ENST00000542110 379 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 RRN3P3-201ENST00000549207 578 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AC079600.2-201ENST00000550076 130 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AC104695.3-201ENST00000604052 296 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AC068205.3-201ENST00000636385 468 ntBASIC3.28□□□□□ -1.88
CCDC144BQ3MJ40 AP006437.1-201ENST00000641440 3685 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 RNA5SP361-201ENST00000362686 118 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.152-201ENST00000363578 100 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 SNORA9.2-201ENST00000365361 133 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-1072P-201ENST00000384703 107 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-443P-201ENST00000384780 107 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 MIR586-201ENST00000385035 97 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-823P-201ENST00000391042 103 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.645-201ENST00000391229 102 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 RPL19P1-201ENST00000411635 428 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 RN7SL499P-201ENST00000481141 276 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms