Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SNORD50.2-201ENST00000365465 70 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 RNY1P5-201ENST00000383890 115 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 SNORA36A-201ENST00000384221 132 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A3Q01955 AC009963.1-201ENST00000417265 157 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 RPL39P29-201ENST00000447779 157 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC005042.3-201ENST00000453230 174 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AP000873.1-201ENST00000463987 400 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC091021.1-201ENST00000468051 388 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.95□□□□□ -1.94
COL4A3Q01955 AC005921.1-201ENST00000510589 286 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 RNU6-346P-201ENST00000516288 111 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
COL4A3Q01955 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
COL4A3Q01955 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
COL4A3Q01955 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
COL4A3Q01955 RNU6-1285P-201ENST00000363480 105 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 RNA5SP167-201ENST00000365461 116 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 MIR1183-201ENST00000408856 89 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 RNU6-1135P-201ENST00000411083 103 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 AC245291.1-201ENST00000419501 328 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.94□□□□□ -1.94
COL4A3Q01955 FTH1P6-201ENST00000430768 320 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 AL591806.2-201ENST00000433122 173 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.94□□□□□ -1.94
COL4A3Q01955 HMGN2P10-201ENST00000448085 265 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 RPL23AP3-201ENST00000453844 468 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 SNORD2.1-201ENST00000458762 69 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.94□□□□□ -1.94
COL4A3Q01955 RNU7-200P-201ENST00000516105 62 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 RNU6-548P-201ENST00000517083 115 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 MIR3690-201ENST00000580266 75 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 AC104465.1-201ENST00000611365 139 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 MIR3529-201ENST00000637713 78 ntBASIC2.94□□□□□ -1.94
COL4A3Q01955 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
COL4A3Q01955 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A3Q01955 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
COL4A3Q01955 Y_RNA.262-201ENST00000364641 102 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 Y_RNA.304-201ENST00000365011 112 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 SNORA67.4-201ENST00000384688 142 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 SNORA46-201ENST00000384762 135 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 SNORA40.19-201ENST00000390846 128 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.93□□□□□ -1.94
COL4A3Q01955 AC112220.1-201ENST00000434628 355 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.93□□□□□ -1.94
COL4A3Q01955 UQCRBP2-201ENST00000447827 297 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 snoU13.6-201ENST00000458785 104 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 RPS27AP10-201ENST00000496103 208 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 AC008413.1-201ENST00000511864 177 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 RNU5F-8P-201ENST00000515941 111 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.93□□□□□ -1.94
COL4A3Q01955 AL357075.2-201ENST00000614906 189 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 snoU18.1-201ENST00000629629 71 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.93□□□□□ -1.94
COL4A3Q01955 AC093831.2-201ENST00000624393 3427 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.93□□□□□ -1.94
COL4A3Q01955 MTND5P35-201ENST00000557537 1720 ntBASIC2.93□□□□□ -1.94
COL4A3Q01955 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A3Q01955 MIR148B-201ENST00000362252 99 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 RNA5SP289-201ENST00000362332 137 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 SNORD113-1-201ENST00000365321 69 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 RNU6-1310P-201ENST00000384153 107 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 RNU6-804P-201ENST00000384286 107 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 RNU6-851P-201ENST00000384565 107 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
COL4A3Q01955 Y_RNA.597-201ENST00000410463 100 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 RPL32P35-201ENST00000415214 394 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 BPY2DP-201ENST00000422208 265 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 AC063976.3-201ENST00000426849 329 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 AP000705.1-201ENST00000454567 350 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 AC090525.1-201ENST00000479116 478 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 AC068657.1-201ENST00000520807 306 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A3Q01955 AP004242.1-201ENST00000533701 349 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 AC018448.1-201ENST00000552843 316 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A3Q01955 AC004467.1-201ENST00000615678 330 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2.92□□□□□ -1.94
COL4A3Q01955 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.92□□□□□ -1.94
COL4A3Q01955 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A3Q01955 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A3Q01955 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.92□□□□□ -1.94
COL4A3Q01955 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A3Q01955 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A3Q01955 AL109809.4-201ENST00000603520 2185 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A3Q01955 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A3Q01955 RNU6-622P-201ENST00000384272 103 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 RNA5SP475-201ENST00000410568 110 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 RNA5SP21-201ENST00000410917 96 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 AC138623.1-201ENST00000418060 216 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.92□□□□□ -1.94
COL4A3Q01955 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.92□□□□□ -1.94
COL4A3Q01955 AC007215.1-201ENST00000464893 276 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 SRIP1-201ENST00000489235 288 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 MTND5P41-201ENST00000517498 206 ntBASIC2.92□□□□□ -1.94
COL4A3Q01955 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A3Q01955 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A3Q01955 AC110491.1-201ENST00000562191 2010 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms