Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 Y_RNA.452-201ENST00000384202 108 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 RNU6-708P-201ENST00000384217 107 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 U8.10-201ENST00000384260 133 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 MIR625-201ENST00000385047 85 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
FOXN3O00409 MIR1302-3-201ENST00000408128 138 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 MIR1294-201ENST00000408503 142 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 RPS26P42-201ENST00000413485 326 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXN3O00409 AC003685.2-201ENST00000422795 395 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXN3O00409 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXN3O00409 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXN3O00409 RNA5SP282-201ENST00000516355 108 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXN3O00409 AC110588.1-201ENST00000559699 137 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 UBL5P4-201ENST00000562584 236 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXN3O00409 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXN3O00409 ELOCP29-201ENST00000588193 334 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 AL049779.4-201ENST00000604500 156 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 AC005520.5-201ENST00000613926 164 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 AC010297.1-201ENST00000623948 149 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
FOXN3O00409 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXN3O00409 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
FOXN3O00409 Z82209.1-201ENST00000422141 2135 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
FOXN3O00409 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.8□□□□□ -1.96
FOXN3O00409 Y_RNA.26-201ENST00000362539 101 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 RNU6-546P-201ENST00000383991 107 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 RNU6-17P-201ENST00000384245 107 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 SNORA51.11-201ENST00000384442 131 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 RNU6-18P-201ENST00000384527 107 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 MIR592-201ENST00000384959 97 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXN3O00409 USP9YP16-201ENST00000430287 407 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 USP9YP23-201ENST00000455085 407 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 AP000870.1-201ENST00000472927 406 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 RPS27AP9-201ENST00000477681 438 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 AC107032.1-201ENST00000485945 480 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXN3O00409 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXN3O00409 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXN3O00409 Y_RNA.715-201ENST00000517082 110 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 Y_RNA.721-201ENST00000517207 102 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXN3O00409 AL161670.1-201ENST00000554348 137 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 EIF4BP1-201ENST00000554881 351 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 MIR5695-201ENST00000579717 85 ntBASIC2.79□□□□□ -1.96
FOXN3O00409 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXN3O00409 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXN3O00409 RNU6-137P-201ENST00000363680 108 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 MIR628-201ENST00000385229 95 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 MIR524-201ENST00000385242 87 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
FOXN3O00409 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
FOXN3O00409 WARS2P1-201ENST00000429678 537 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXN3O00409 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXN3O00409 AL731563.1-201ENST00000442202 214 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 PCNPP5-201ENST00000452246 481 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 MTCO3P8-201ENST00000453691 755 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 RNU7-4P-201ENST00000516961 62 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXN3O00409 GTF3AP2-201ENST00000557014 266 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXN3O00409 U4.1-201ENST00000620349 87 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 AC006386.2-201ENST00000624491 75 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 AC012005.1-201ENST00000624575 75 ntBASIC2.78□□□□□ -1.96
FOXN3O00409 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXN3O00409 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXN3O00409 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXN3O00409 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
FOXN3O00409 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
FOXN3O00409 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.77□□□□□ -1.97
FOXN3O00409 RNU1-91P-201ENST00000364746 163 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 RNU6-702P-201ENST00000364982 107 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 RNU6-806P-201ENST00000365147 105 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 Y_RNA.401-201ENST00000383965 117 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 SNORA69.1-201ENST00000390904 137 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 DYNLT3P2-201ENST00000442517 295 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXN3O00409 RNU6-475P-201ENST00000516073 104 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 RNU5F-4P-201ENST00000516581 114 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 RNU6-826P-201ENST00000516827 104 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 RNU6-58P-201ENST00000517143 103 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 AC027288.2-201ENST00000553028 243 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 RAC1P9-201ENST00000604990 392 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXN3O00409 U2.1-201ENST00000618978 145 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 MIR6852-201ENST00000621699 66 ntBASIC2.77□□□□□ -1.97
FOXN3O00409 SNORD115-8-201ENST00000363856 82 ntBASIC2.76□□□□□ -1.97
FOXN3O00409 SNORD32B-201ENST00000364460 84 ntBASIC2.76□□□□□ -1.97
FOXN3O00409 SNORD115-38-201ENST00000365037 82 ntBASIC2.76□□□□□ -1.97
FOXN3O00409 SNORA63.7-201ENST00000365579 123 ntBASIC2.76□□□□□ -1.97
FOXN3O00409 Y_RNA.396-201ENST00000383949 103 ntBASIC2.76□□□□□ -1.97
FOXN3O00409 RNU1-52P-201ENST00000384190 164 ntBASIC2.76□□□□□ -1.97
FOXN3O00409 MIR561-201ENST00000385216 97 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms