Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC007656.2-201ENST00000624902 4547 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 RNU1-20P-201ENST00000363314 162 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 RNVU1-6-201ENST00000364688 164 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 SNORA18-201ENST00000384416 132 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 MIR518F-201ENST00000384973 87 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 RNA5SP372-201ENST00000390836 115 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 AC008897.1-201ENST00000494006 347 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 RPS29P21-201ENST00000496272 170 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 MIR4305-201ENST00000583252 102 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 MIR6810-201ENST00000622701 70 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 AC006160.2-201ENST00000637708 154 ntBASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 AC000403.1-201ENST00000613696 3585 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.155-201ENST00000363632 101 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 SNORD113.2-201ENST00000364166 89 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.360-201ENST00000365512 102 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.410-201ENST00000383992 113 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 SNORD38C-201ENST00000384381 69 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 RNA5SP397-201ENST00000391323 118 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.611-201ENST00000410682 108 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 AL513477.1-202ENST00000417061 214 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 RNU1-131P-201ENST00000458943 161 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 RNU7-172P-201ENST00000517125 64 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 AC022655.2-201ENST00000577280 318 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 MIR4330-201ENST00000579077 105 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 MIR4777-201ENST00000583710 86 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 HMGN2P15-201ENST00000585707 270 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS9D1Q9Y2B5 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 AC010680.1-201ENST00000590024 3590 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.242-201ENST00000364473 110 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 RNU1-44P-201ENST00000384453 163 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 RNU1-57P-201ENST00000384491 166 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6-733P-201ENST00000410759 104 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 SNRPGP3-201ENST00000469405 227 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 RN7SL817P-201ENST00000480777 288 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 RN7SKP57-201ENST00000517248 293 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 AC073308.1-201ENST00000623696 305 ntBASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS9D1Q9Y2B5 CPHL1P-201ENST00000461341 3407 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 AC009487.4-201ENST00000624969 3585 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 RNA5SP22-201ENST00000365393 109 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 MIR147B-201ENST00000390185 80 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.621-201ENST00000411065 96 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 RPL23AP46-201ENST00000438548 490 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 AC009220.1-201ENST00000451614 275 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 SNORD108-201ENST00000459332 71 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 HMGN1P7-201ENST00000491722 313 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 RPL21P129-201ENST00000491732 478 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 PPBPP1-201ENST00000510807 373 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 RNA5SP497-201ENST00000516081 97 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 Y_RNA.705-201ENST00000516862 110 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 RN7SL703P-201ENST00000578485 302 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 RN7SL176P-201ENST00000580352 264 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 MIR4270-201ENST00000581799 70 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 RN7SL690P-201ENST00000582087 240 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 AC008507.4-201ENST00000585464 127 ntBASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS9D1Q9Y2B5 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS9D1Q9Y2B5 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms