Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PCGEM1.1-201ENST00000613431 131 ntBASIC4.58□□□□□ -1.68
ZC3H4Q9UPT8 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.58□□□□□ -1.68
ZC3H4Q9UPT8 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.58□□□□□ -1.68
ZC3H4Q9UPT8 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.58□□□□□ -1.68
ZC3H4Q9UPT8 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
ZC3H4Q9UPT8 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 Y_RNA.172-201ENST00000363765 102 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 RNU6-407P-201ENST00000365280 104 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 RNU2-52P-201ENST00000410680 190 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 AL441985.1-201ENST00000457727 251 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 RPL21P10-201ENST00000463521 490 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 SCARNA8-201ENST00000515924 131 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 SNORA31.1-201ENST00000515993 133 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 SNORA31.5-201ENST00000516190 133 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 RNU6-344P-201ENST00000516635 111 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 RPS15AP11-201ENST00000594193 385 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 AL137849.1-201ENST00000604767 169 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 TUG1_4.1-201ENST00000619464 181 ntBASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZC3H4Q9UPT8 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 MIR616-201ENST00000385293 97 ntBASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 AL355497.1-201ENST00000406262 551 ntBASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 TOMM22P2-201ENST00000430735 237 ntBASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 EIF4A1P12-201ENST00000551910 141 ntBASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.56□□□□□ -1.68
ZC3H4Q9UPT8 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 SNORD9-201ENST00000362566 104 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 Y_RNA.40-201ENST00000362645 93 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 RNU6-529P-201ENST00000363383 104 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 U3.9-201ENST00000363823 204 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 RNU6-153P-201ENST00000364422 104 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 MIR15B-201ENST00000385045 98 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 RPL23AP82-202ENST00000427528 469 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 AC145146.1-201ENST00000496370 254 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 AC022695.1-201ENST00000522089 237 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 HIGD1AP1-201ENST00000550979 275 ntBASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC4.55□□□□□ -1.68
ZC3H4Q9UPT8 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 MIR367-201ENST00000362299 68 ntBASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 RNU6-643P-201ENST00000384018 107 ntBASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 MT-TT-201ENST00000387460 66 ntBASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 MIR147B-201ENST00000390185 80 ntBASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 RNU6-460P-201ENST00000391158 108 ntBASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 RNA5SP201-201ENST00000410316 124 ntBASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 AL365496.1-201ENST00000426885 215 ntBASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 RNU7-141P-201ENST00000459304 62 ntBASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZC3H4Q9UPT8 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 Y_RNA.368-201ENST00000365547 113 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 Y_RNA.521-201ENST00000384560 114 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 RNU6-748P-201ENST00000384648 107 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 RNU1-101P-201ENST00000391171 127 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 RNU2-49P-201ENST00000410666 184 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 RNA5SP504-201ENST00000410676 117 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 RNA5SP38-201ENST00000410750 119 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 RN7SL585P-201ENST00000470538 280 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 SNORD59.2-201ENST00000516873 68 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 LARP7P3-201ENST00000579888 337 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.53□□□□□ -1.68
ZC3H4Q9UPT8 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms