Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU6-222P-201ENST00000362438 107 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 RNU6-245P-201ENST00000384020 107 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 MIR10B-201ENST00000385011 110 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 RNA5SP213-201ENST00000391031 106 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 AL358176.2-201ENST00000425769 204 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 AC105272.1-201ENST00000438604 198 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 UBBP3-201ENST00000445497 241 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 AC080013.2-201ENST00000460866 323 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 AC073901.1-201ENST00000462471 408 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 AC145146.1-201ENST00000496370 254 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 Y_RNA.713-201ENST00000517013 96 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 AC026470.2-201ENST00000561492 181 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 RPL17P51-201ENST00000605218 238 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 AL121655.1-201ENST00000605811 308 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 AC069294.1-201ENST00000608397 350 ntBASIC3.03□□□□□ -1.92
LIMCH1Q9UPQ0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 DEFA7P-201ENST00000382676 285 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-378P-201ENST00000384324 107 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-1105P-201ENST00000384774 107 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-1328P-201ENST00000410938 106 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 HMGB3P2-201ENST00000411913 584 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 DPH3P2-201ENST00000422618 250 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 SDAD1P3-201ENST00000427380 333 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 WARS2P1-201ENST00000429678 537 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 MTND3P2-201ENST00000438452 342 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 AC073910.1-201ENST00000445047 438 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 RN7SKP132-201ENST00000516001 208 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 AC034114.1-201ENST00000520293 285 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 PRR13P7-201ENST00000605538 430 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 AL137790.1-201ENST00000634283 177 ntBASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
LIMCH1Q9UPQ0 AC138915.1-201ENST00000565427 1685 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 snoU2_19.1-201ENST00000362361 80 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-879P-201ENST00000364328 108 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-450P-201ENST00000364654 107 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 RNU1-109P-201ENST00000383960 147 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-281P-201ENST00000384212 103 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 RPL30P4-201ENST00000429309 333 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 U8.22-201ENST00000459141 133 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 U8.20-201ENST00000459445 131 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 AC140059.1-201ENST00000489238 361 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-1046P-201ENST00000516538 107 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 CYCSP23-201ENST00000519781 313 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 COX6CP5-201ENST00000527162 228 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 MIR3616-201ENST00000584070 92 ntBASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
LIMCH1Q9UPQ0 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 MIR6073-201ENST00000352083 89 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-1301P-201ENST00000362724 104 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 Y_RNA.133-201ENST00000363428 110 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 Y_RNA.153-201ENST00000363615 91 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 Y_RNA.276-201ENST00000364732 109 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 SNORD78.2-201ENST00000391076 69 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 MIR548F4-201ENST00000408515 105 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 RPS12P2-201ENST00000439728 269 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 AC096725.1-201ENST00000514266 313 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 RN7SKP49-201ENST00000516675 260 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 MIR5695-201ENST00000579717 85 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 AC105245.1-201ENST00000581934 244 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 MIR3199-1-201ENST00000582434 88 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 MIR4298-201ENST00000584380 73 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 ELOCP29-201ENST00000588193 334 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 ZNF204P-201ENST00000416749 2397 ntBASIC3□□□□□ -1.93
LIMCH1Q9UPQ0 AC080128.1-201ENST00000474389 1917 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 Y_RNA.176-201ENST00000363815 109 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 SNORD56.5-201ENST00000364281 72 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 SNORA46.1-201ENST00000391069 153 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AC107083.1-201ENST00000439643 279 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 FCF1P4-201ENST00000448326 183 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AC093023.1-201ENST00000547375 507 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 UBL5P4-201ENST00000562584 236 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AC010205.1-201ENST00000616668 449 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 MIR5739-201ENST00000619803 80 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AC010297.1-201ENST00000623948 149 ntBASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.99□□□□□ -1.93
LIMCH1Q9UPQ0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms