Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.4□□□□□ -1.87
CCDC113Q9H0I3 MIR8062-201ENST00000621515 85 ntBASIC3.4□□□□□ -1.87
CCDC113Q9H0I3 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC113Q9H0I3 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC113Q9H0I3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 AC073325.2-201ENST00000339545 159 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 MIR422A-201ENST00000362286 90 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 Y_RNA.401-201ENST00000383965 117 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 SNORD15B-201ENST00000384714 146 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 SNORD67-201ENST00000390833 111 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 RN7SKP220-201ENST00000410611 288 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 CBX3P6-201ENST00000430257 527 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 AC091179.3-201ENST00000474761 144 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 RPS29P2-201ENST00000479278 136 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 AP003733.2-201ENST00000529409 171 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 RRN3P3-201ENST00000549207 578 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 MYL12BP1-201ENST00000569826 507 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 AC078899.3-201ENST00000599065 212 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 MIR376A1-201ENST00000616574 68 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 LINC02555-201ENST00000563933 1951 ntBASIC3.39□□□□□ -1.87
CCDC113Q9H0I3 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 RNU6-806P-201ENST00000365147 105 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 RNA5SP240-201ENST00000365355 128 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 DYNLT3P1-201ENST00000378574 347 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 RNU2-20P-201ENST00000410425 191 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 RNU2-63P-201ENST00000410792 194 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AC104332.2-201ENST00000429959 156 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AL161788.1-201ENST00000441805 169 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 IFNA11P-201ENST00000446352 526 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 LINC01399-202ENST00000458450 244 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AC083906.5-201ENST00000503722 328 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AC074133.1-201ENST00000515696 183 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AC138915.1-201ENST00000565427 1685 ntBASIC3.38□□□□□ -1.87
CCDC113Q9H0I3 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 AL035425.3-201ENST00000564206 4996 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 RNU1-72P-201ENST00000362976 153 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 RNU6-626P-201ENST00000363354 107 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 SNORD32B-201ENST00000364460 84 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 AC009237.7-201ENST00000447357 229 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 MIR449C-201ENST00000516047 92 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 RNU6-107P-201ENST00000516643 102 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 RNU1-117P-201ENST00000517041 158 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 MIR3117-201ENST00000584034 78 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 MIR3616-201ENST00000584070 92 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 AC023043.3-201ENST00000593113 385 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 SNORD11B-201ENST00000607707 90 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 AC092435.3-201ENST00000565538 3654 ntBASIC3.37□□□□□ -1.87
CCDC113Q9H0I3 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 Y_RNA.26-201ENST00000362539 101 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 RNU6-944P-201ENST00000364023 107 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 Y_RNA.461-201ENST00000384263 103 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 RNU6-937P-201ENST00000384325 106 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 RNU5A-5P-201ENST00000411054 116 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 RNU6-625P-201ENST00000459412 107 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 RNU6-344P-201ENST00000516635 111 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 RNU6-570P-201ENST00000517051 105 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 AL162274.2-201ENST00000614406 332 ntBASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC113Q9H0I3 Y_RNA.193-201ENST00000363979 102 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 RNU6-461P-201ENST00000364195 107 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 SNORA72.2-201ENST00000365028 127 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 AL031121.1-201ENST00000406553 254 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 Z92545.1-201ENST00000411782 234 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 AC096920.1-201ENST00000423991 241 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 AC018448.1-201ENST00000552843 316 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 AC233702.2-202ENST00000562547 291 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 AL355297.2-201ENST00000604792 129 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 AL357075.2-201ENST00000614906 189 ntBASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CCDC113Q9H0I3 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms