Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CKS1BP7-201ENST00000522230 235 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 AC021231.3-201ENST00000558497 370 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 AC009163.5-201ENST00000575421 637 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.771-201ENST00000598668 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.789-201ENST00000622480 102 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 AC135776.4-201ENST00000624300 1904 ntBASIC3.74□□□□□ -1.81
USHBP1Q8N6Y0 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 AC092268.1-201ENST00000342691 405 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 RNU5F-3P-201ENST00000363767 117 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.446-201ENST00000384178 104 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-1035P-201ENST00000384477 107 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 MIR487A-201ENST00000385009 80 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-493P-201ENST00000391321 108 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 AP000567.1-201ENST00000406413 156 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 Y_RNA.595-201ENST00000410403 105 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 RNA5SP274-201ENST00000410484 108 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 AC244670.1-201ENST00000436879 112 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 RN7SL442P-201ENST00000473804 320 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 RPS27AP10-201ENST00000496103 208 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 SNORA40.9-201ENST00000515895 93 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-581P-201ENST00000516214 105 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 MIR3529-201ENST00000637713 78 ntBASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
USHBP1Q8N6Y0 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 RNU6-47P-201ENST00000383866 107 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AL591034.1-201ENST00000407447 340 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 RNA5SP390-201ENST00000410191 113 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AL159169.1-201ENST00000421119 127 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 OOSP1P1-201ENST00000423265 274 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC010095.1-201ENST00000443543 144 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 HMGN2P10-201ENST00000448085 265 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC091959.1-201ENST00000495857 238 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 CYCSP23-201ENST00000519781 313 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC107016.2-201ENST00000547968 190 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC021739.1-201ENST00000559631 174 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC005176.2-201ENST00000596933 147 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC011921.3-201ENST00000605540 361 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AL359198.2-201ENST00000611836 194 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 AC010999.1-201ENST00000611856 324 ntBASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.72□□□□□ -1.81
USHBP1Q8N6Y0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
USHBP1Q8N6Y0 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.136-201ENST00000363444 102 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.331-201ENST00000365267 102 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.418-201ENST00000384029 102 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 SNORA36A-201ENST00000384221 132 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 SNORA46.1-201ENST00000391069 153 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 MIR548I2-201ENST00000408348 149 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC012306.1-201ENST00000423267 114 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 POLR2KP2-201ENST00000438155 177 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 RPL39P29-201ENST00000447779 157 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 RPL26P9-201ENST00000457466 433 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AP001025.1-201ENST00000486139 332 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC074198.2-201ENST00000508153 258 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.662-201ENST00000516028 97 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-1278P-201ENST00000516130 107 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC022559.1-201ENST00000520905 205 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC091544.4-201ENST00000555268 342 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC004832.5-201ENST00000608677 401 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 U6.106-201ENST00000636360 105 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC132825.6-201ENST00000638861 357 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC002546.1-201ENST00000588041 2504 ntBASIC3.71□□□□□ -1.82
USHBP1Q8N6Y0 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.383-201ENST00000383855 97 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-1289P-201ENST00000384431 106 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 AC007395.1-201ENST00000451333 677 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 RPS29P20-201ENST00000489592 171 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-928P-201ENST00000516876 104 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 AC233702.2-202ENST00000562547 291 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 MZT1P2-201ENST00000604387 248 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 AL590240.4-201ENST00000616908 390 ntBASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.7□□□□□ -1.82
USHBP1Q8N6Y0 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms