Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXC9P31274 MIR4795-201ENST00000584182 89 ntBASIC2.41□□□□□ -2.02
HOXC9P31274 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.41□□□□□ -2.02
HOXC9P31274 Z98751.3-201ENST00000604447 521 ntBASIC2.41□□□□□ -2.02
HOXC9P31274 LARP7P1-201ENST00000605576 316 ntBASIC2.41□□□□□ -2.02
HOXC9P31274 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.41□□□□□ -2.02
HOXC9P31274 MIR5739-201ENST00000619803 80 ntBASIC2.41□□□□□ -2.02
HOXC9P31274 AL669831.3-213ENST00000636676 183 ntBASIC2.41□□□□□ -2.02
HOXC9P31274 AL450472.1-202ENST00000637286 180 ntBASIC2.41□□□□□ -2.02
HOXC9P31274 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXC9P31274 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
HOXC9P31274 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.4□□□□□ -2.02
HOXC9P31274 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXC9P31274 RNU6-661P-201ENST00000362409 107 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 Y_RNA.238-201ENST00000364441 102 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 Y_RNA.259-201ENST00000364619 101 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 RNU6-1286P-201ENST00000383871 107 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 Y_RNA.404-201ENST00000383978 102 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 SNORA29-201ENST00000384183 140 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 U8.10-201ENST00000384260 133 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 RNU6-331P-201ENST00000384724 107 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 AL591034.2-201ENST00000402839 359 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 RNU6-174P-201ENST00000410406 106 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 HMGB3P2-201ENST00000411913 584 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 RPL23AP36-201ENST00000413895 458 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 AL590556.1-201ENST00000423231 483 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 RPL23AP50-201ENST00000434149 455 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 AC079354.2-201ENST00000453523 154 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 AC079804.2-201ENST00000490376 200 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 AC022447.4-201ENST00000504053 364 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 AC005741.1-201ENST00000511094 432 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 RNU6-586P-201ENST00000517265 104 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXC9P31274 CBX3P7-201ENST00000532876 502 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 FGF7P1-201ENST00000582820 288 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 AL138963.2-201ENST00000605137 226 ntBASIC2.4□□□□□ -2.03
HOXC9P31274 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXC9P31274 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXC9P31274 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXC9P31274 RNU6-1188P-201ENST00000363795 107 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 RNU6-1274P-201ENST00000384557 107 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 RNA5SP494-201ENST00000410653 129 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 RNU2-63P-201ENST00000410792 194 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 RNU2-41P-201ENST00000410991 178 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXC9P31274 EIF4EP2-201ENST00000422816 654 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 RPL30P15-201ENST00000457129 321 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 Y_RNA.632-201ENST00000459189 102 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 AC145146.1-201ENST00000496370 254 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 RNA5SP384-201ENST00000516615 116 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 RNU1-40P-201ENST00000516816 164 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 RNU1-97P-201ENST00000516872 164 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 CBX3P8-201ENST00000532412 525 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXC9P31274 MIR4658-201ENST00000584344 65 ntBASIC2.39□□□□□ -2.03
HOXC9P31274 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXC9P31274 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXC9P31274 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXC9P31274 AC080100.1-201ENST00000624239 5356 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 RNU4-15P-201ENST00000362613 141 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 SNORA26.3-201ENST00000391119 136 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 SNORA12-201ENST00000391162 147 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 RNA5SP338-201ENST00000410495 85 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 USMG5P1-201ENST00000425964 177 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 AL353997.1-201ENST00000432936 108 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXC9P31274 AL161788.1-201ENST00000441805 169 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXC9P31274 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXC9P31274 SCARNA16.2-201ENST00000516520 172 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXC9P31274 MIR3923-201ENST00000579521 83 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 MIR5690-201ENST00000583739 73 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 AL117336.2-201ENST00000602435 335 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 AL355297.2-201ENST00000604792 129 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 AC008121.3-201ENST00000618726 433 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 AC104985.2-201ENST00000620598 500 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.38□□□□□ -2.03
HOXC9P31274 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
HOXC9P31274 RNA5SP393-201ENST00000363423 117 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 RNU6-596P-201ENST00000365395 98 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 RNU6-310P-201ENST00000384655 107 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 MIR208B-201ENST00000401172 77 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 Y_RNA.646-201ENST00000410980 101 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 RNA5SP270-201ENST00000411361 118 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 AC012306.1-201ENST00000423267 114 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXC9P31274 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXC9P31274 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.37□□□□□ -2.03
HOXC9P31274 CYP2C59P-201ENST00000457790 269 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 AC087477.1-201ENST00000465747 340 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 AF186996.7-201ENST00000492781 209 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXC9P31274 RNU1-104P-201ENST00000517280 175 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 MIR4303-201ENST00000581299 66 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 snoU13.31-201ENST00000607291 104 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 AC084781.2-201ENST00000615568 161 ntBASIC2.37□□□□□ -2.03
HOXC9P31274 Y_RNA.164-201ENST00000363709 102 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 RNU6-944P-201ENST00000364023 107 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 SNORD116-29-201ENST00000384516 83 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms