Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-693P-201ENST00000516134 107 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 RNU1-95P-201ENST00000516357 160 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 RNU1-128P-201ENST00000516704 160 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 RN7SKP209-201ENST00000516888 304 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 RNA5SP490-201ENST00000517141 136 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 uc_338.14-201ENST00000613162 166 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL9A1P20849 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL9A1P20849 AC092376.2-201ENST00000622621 4116 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.53□□□□□ -1.68
COL9A1P20849 AL365361.1-201ENST00000566942 3481 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL9A1P20849 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.53□□□□□ -1.68
COL9A1P20849 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.53□□□□□ -1.68
COL9A1P20849 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL9A1P20849 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL9A1P20849 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL9A1P20849 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL9A1P20849 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
COL9A1P20849 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.52□□□□□ -1.69
COL9A1P20849 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.52□□□□□ -1.69
COL9A1P20849 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL9A1P20849 MIR331-201ENST00000362302 94 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 RNU6-1276P-201ENST00000365372 104 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 SNORA5A-201ENST00000384111 134 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 RNA5SP293-201ENST00000410527 113 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 RPL39P25-201ENST00000449384 154 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 AC115115.1-201ENST00000449927 248 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 RNU7-23P-201ENST00000459465 62 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC4.52□□□□□ -1.69
COL9A1P20849 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.52□□□□□ -1.69
COL9A1P20849 MIR3690-201ENST00000580266 75 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 MIR3163-201ENST00000581592 73 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 MIR4438-201ENST00000585271 93 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 AC006272.2-201ENST00000594725 163 ntBASIC4.52□□□□□ -1.69
COL9A1P20849 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL9A1P20849 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL9A1P20849 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
COL9A1P20849 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL9A1P20849 AC104623.2-202ENST00000623477 4002 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL9A1P20849 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
COL9A1P20849 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
COL9A1P20849 Y_RNA.10-201ENST00000362371 110 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 RNY3P2-201ENST00000362918 102 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 RNU6-486P-201ENST00000363116 107 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 Y_RNA.298-201ENST00000364960 107 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 SNORA4.2-201ENST00000365313 147 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 MIR520G-201ENST00000385064 90 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
COL9A1P20849 RNU6-279P-201ENST00000391297 101 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 RPL36AP10-201ENST00000421785 322 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.51□□□□□ -1.69
COL9A1P20849 SNRPGP13-201ENST00000442212 177 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 RN7SL293P-201ENST00000481765 281 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC4.51□□□□□ -1.69
COL9A1P20849 RNU2-34P-201ENST00000516534 121 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 AC109329.2-201ENST00000519658 482 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 AC021443.1-201ENST00000604478 211 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 uc_338.13-201ENST00000618243 179 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 MIR6891-201ENST00000618788 93 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 MAPK10-320ENST00000641462 6696 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL9A1P20849 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.51□□□□□ -1.69
COL9A1P20849 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL9A1P20849 AF117829.1-206ENST00000621883 3802 ntBASIC4.51□□□□□ -1.69
COL9A1P20849 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.51□□□□□ -1.69
COL9A1P20849 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL9A1P20849 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL9A1P20849 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.5□□□□□ -1.69
COL9A1P20849 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL9A1P20849 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
COL9A1P20849 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL9A1P20849 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.5□□□□□ -1.69
COL9A1P20849 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.5□□□□□ -1.69
COL9A1P20849 AC000123.3-201ENST00000624029 4975 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 RNU6-234P-201ENST00000365229 104 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 MT-TI-201ENST00000387365 69 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 Y_RNA.601-201ENST00000410500 113 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 SNORA57.3-201ENST00000411095 141 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 RPS29P4-201ENST00000414733 161 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 RPL23AP67-201ENST00000465341 474 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 RNU6-237P-201ENST00000515985 71 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 AC068657.1-201ENST00000520807 306 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.5□□□□□ -1.69
COL9A1P20849 AC015912.2-201ENST00000571053 181 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.5□□□□□ -1.69
COL9A1P20849 U3.45-201ENST00000607547 219 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL9A1P20849 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL9A1P20849 AP003122.5-201ENST00000527668 3766 ntBASIC4.5□□□□□ -1.69
COL9A1P20849 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL9A1P20849 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL9A1P20849 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC4.49□□□□□ -1.69
COL9A1P20849 AL672167.1-204ENST00000641875 3017 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
COL9A1P20849 Y_RNA.290-201ENST00000364879 114 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 MIR548A2-201ENST00000384956 97 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 AL513477.1-202ENST00000417061 214 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms