Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HMGN2P9-201ENST00000476875 229 ntBASIC2.68□□□□□ -1.98
HMGB1P09429 RNA5SP54-201ENST00000516951 92 ntBASIC2.68□□□□□ -1.98
HMGB1P09429 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.68□□□□□ -1.98
HMGB1P09429 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.68□□□□□ -1.98
HMGB1P09429 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.68□□□□□ -1.98
HMGB1P09429 AC126177.8-201ENST00000618339 1015 ntBASIC2.68□□□□□ -1.98
HMGB1P09429 AC006001.4-201ENST00000622243 395 ntBASIC2.68□□□□□ -1.98
HMGB1P09429 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.68□□□□□ -1.98
HMGB1P09429 MIRLET7G-201ENST00000362280 84 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 RNU6-1148P-201ENST00000410992 104 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 EBAG9P1-201ENST00000418955 543 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.67□□□□□ -1.98
HMGB1P09429 AC008834.1-201ENST00000511612 175 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 RNU6-1088P-201ENST00000516850 104 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.67□□□□□ -1.98
HMGB1P09429 MIR4672-201ENST00000583126 81 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 AC009831.4-201ENST00000620744 325 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 AL078596.1-201ENST00000624856 447 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 AC073869.6-201ENST00000640656 341 ntBASIC2.67□□□□□ -1.98
HMGB1P09429 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HMGB1P09429 MIR424-201ENST00000362227 98 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 Y_RNA.6-201ENST00000362350 114 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 RNU6-661P-201ENST00000362409 107 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 MIR520A-201ENST00000384862 85 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.66□□□□□ -1.98
HMGB1P09429 UBE2V1P8-201ENST00000437166 265 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.66□□□□□ -1.98
HMGB1P09429 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.66□□□□□ -1.98
HMGB1P09429 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.66□□□□□ -1.98
HMGB1P09429 RNU7-57P-201ENST00000459540 60 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.66□□□□□ -1.98
HMGB1P09429 RNU1-54P-201ENST00000517181 120 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 MIR8074-201ENST00000615081 81 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 AC010615.1-201ENST00000594254 1764 ntBASIC2.66□□□□□ -1.98
HMGB1P09429 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HMGB1P09429 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.98
HMGB1P09429 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
HMGB1P09429 RNU6-414P-201ENST00000363705 104 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 Y_RNA.319-201ENST00000365138 92 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 SNORA51.11-201ENST00000384442 131 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RNU6-1235P-201ENST00000384559 107 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RNU6-296P-201ENST00000384608 107 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 MIR153-2-201ENST00000385225 87 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RNU6-57P-201ENST00000411348 103 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RPL30P16-201ENST00000419341 429 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RPL31P63-201ENST00000422565 375 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.65□□□□□ -1.99
HMGB1P09429 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.65□□□□□ -1.99
HMGB1P09429 RNU6-498P-201ENST00000459468 107 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RPL36AP21-201ENST00000490372 323 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.65□□□□□ -1.99
HMGB1P09429 RNA5SP200-201ENST00000516360 103 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 SNORA25.14-201ENST00000516481 132 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RNA5SP281-201ENST00000516504 135 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RNU1-40P-201ENST00000516816 164 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RNU1-97P-201ENST00000516872 164 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 RNU6-1198P-201ENST00000516904 67 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.65□□□□□ -1.99
HMGB1P09429 SCARNA15.3-201ENST00000626315 122 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.65□□□□□ -1.99
HMGB1P09429 SCARNA4.1-201ENST00000628597 123 ntBASIC2.65□□□□□ -1.99
HMGB1P09429 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HMGB1P09429 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HMGB1P09429 MIR586-201ENST00000385035 97 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 MIR634-201ENST00000385208 97 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 SNORA48.3-201ENST00000391081 134 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.64□□□□□ -1.99
HMGB1P09429 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.64□□□□□ -1.99
HMGB1P09429 RPL23AP63-201ENST00000498752 471 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 RNA5SP454-201ENST00000517231 127 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.64□□□□□ -1.99
HMGB1P09429 MIR3198-2-201ENST00000577868 80 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 MIR6128-201ENST00000615528 109 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 AL160394.1-201ENST00000624765 724 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.64□□□□□ -1.99
HMGB1P09429 AC068205.3-201ENST00000636385 468 ntBASIC2.64□□□□□ -1.99
HMGB1P09429 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.64□□□□□ -1.99
HMGB1P09429 RNA5SP289-201ENST00000362332 137 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 RNU6-1019P-201ENST00000364424 107 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 SNORA67.3-201ENST00000384366 140 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HMGB1P09429 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.63□□□□□ -1.99
HMGB1P09429 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.63□□□□□ -1.99
HMGB1P09429 HSPE1P9-201ENST00000440046 311 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 AC112492.4-201ENST00000456549 352 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 AC025465.3-201ENST00000510570 311 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 RNU4-49P-201ENST00000516080 140 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 RNU6-566P-201ENST00000516790 107 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 RNU6-58P-201ENST00000517143 103 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 AC084364.2-201ENST00000546924 395 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.63□□□□□ -1.99
HMGB1P09429 AC016925.2-201ENST00000605108 242 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 MIR6132-201ENST00000622083 109 ntBASIC2.63□□□□□ -1.99
HMGB1P09429 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.62□□□□□ -1.99
HMGB1P09429 AC027514.1-201ENST00000588561 1603 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.62□□□□□ -1.99
HMGB1P09429 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HMGB1P09429 SNORD115-32-201ENST00000364079 82 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms