Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 MAPK10-372ENST00000641954 3413 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 AL159152.1-201ENST00000635019 2587 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 Y_RNA.293-201ENST00000364908 93 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 Y_RNA.310-201ENST00000365063 113 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 Y_RNA.337-201ENST00000365312 102 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 Y_RNA.341-201ENST00000365341 102 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 MIR513C-201ENST00000401352 84 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 Z98941.1-201ENST00000407764 100 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 AC026402.1-201ENST00000513642 170 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 AC090616.3-201ENST00000582184 217 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 MIR5187-201ENST00000583479 76 ntBASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
UBE3DQ7Z6J8 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 snoU2_19.4-201ENST00000364329 80 ntBASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 MIR539-201ENST00000365690 78 ntBASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 HMGN2P20-201ENST00000437531 273 ntBASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 RPL23AP58-201ENST00000440453 469 ntBASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 RPS29P2-201ENST00000479278 136 ntBASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 AC022616.8-201ENST00000533569 253 ntBASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 AC106785.1-201ENST00000565935 262 ntBASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
UBE3DQ7Z6J8 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 AP001486.2-201ENST00000561652 5113 ntBASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 RNU6-1205P-201ENST00000363625 106 ntBASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 RNA5SP205-201ENST00000364653 136 ntBASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 RNA5SP38-201ENST00000410750 119 ntBASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 AL365222.1-201ENST00000614661 98 ntBASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 AC000403.1-201ENST00000613696 3585 ntBASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 AF127577.6-201ENST00000623352 2191 ntBASIC3.51□□□□□ -1.85
UBE3DQ7Z6J8 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 Y_RNA.273-201ENST00000364703 102 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 SNORA48.5-201ENST00000391143 135 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 AL159169.1-201ENST00000421119 127 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 SNORA70.14-201ENST00000516205 110 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 RN7SKP83-201ENST00000516512 178 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 RNA5SP309-201ENST00000516670 106 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 SNORA31.21-201ENST00000517180 77 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 AC025754.2-201ENST00000606491 432 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 AC006111.3-201ENST00000622137 383 ntBASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
UBE3DQ7Z6J8 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 AC006504.1-201ENST00000562493 3666 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 RNU4-11P-201ENST00000365287 132 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 MIR29B2-201ENST00000385055 81 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 RNU6-1228P-201ENST00000391014 107 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 RPL23AP62-201ENST00000463396 453 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 RPL36AP48-201ENST00000485521 314 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 MIR3646-201ENST00000578301 84 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 U7.8-201ENST00000619968 63 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 AP000553.6-201ENST00000641242 118 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 MFSD8-236ENST00000641509 4050 ntBASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
UBE3DQ7Z6J8 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 194.7 ms