Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
RNF4P78317 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.43□□□□□ -1.86
RNF4P78317 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.43□□□□□ -1.86
RNF4P78317 RNA5SP240-201ENST00000365355 128 ntBASIC3.43□□□□□ -1.86
RNF4P78317 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
RNF4P78317 AL357075.1-201ENST00000404107 726 ntBASIC3.43□□□□□ -1.86
RNF4P78317 SNORA11-201ENST00000408789 128 ntBASIC3.43□□□□□ -1.86
RNF4P78317 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.43□□□□□ -1.86
RNF4P78317 AL451074.5-201ENST00000415894 435 ntBASIC3.43□□□□□ -1.86
RNF4P78317 TOMM22P2-201ENST00000430735 237 ntBASIC3.43□□□□□ -1.86
RNF4P78317 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.43□□□□□ -1.86
RNF4P78317 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.43□□□□□ -1.86
RNF4P78317 RPS27P26-201ENST00000494583 239 ntBASIC3.43□□□□□ -1.86
RNF4P78317 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.43□□□□□ -1.86
RNF4P78317 PHBP14-201ENST00000512887 367 ntBASIC3.43□□□□□ -1.86
RNF4P78317 SNORA67.7-201ENST00000516664 135 ntBASIC3.43□□□□□ -1.86
RNF4P78317 RN7SKP209-201ENST00000516888 304 ntBASIC3.43□□□□□ -1.86
RNF4P78317 SUMO2P18-201ENST00000518873 252 ntBASIC3.43□□□□□ -1.86
RNF4P78317 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.43□□□□□ -1.86
RNF4P78317 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.43□□□□□ -1.86
RNF4P78317 AC090517.3-201ENST00000625170 141 ntBASIC3.43□□□□□ -1.86
RNF4P78317 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.43□□□□□ -1.86
RNF4P78317 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
RNF4P78317 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.43□□□□□ -1.86
RNF4P78317 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
RNF4P78317 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
RNF4P78317 AC134026.1-201ENST00000623249 2239 ntBASIC3.43□□□□□ -1.86
RNF4P78317 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.43□□□□□ -1.86
RNF4P78317 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
RNF4P78317 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
RNF4P78317 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.42□□□□□ -1.86
RNF4P78317 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.42□□□□□ -1.86
RNF4P78317 RNU4-17P-201ENST00000365598 141 ntBASIC3.42□□□□□ -1.86
RNF4P78317 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.42□□□□□ -1.86
RNF4P78317 SNORA67.2-201ENST00000384300 149 ntBASIC3.42□□□□□ -1.86
RNF4P78317 SNORA26.5-201ENST00000391215 123 ntBASIC3.42□□□□□ -1.86
RNF4P78317 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.42□□□□□ -1.86
RNF4P78317 U3.39-201ENST00000408569 239 ntBASIC3.42□□□□□ -1.86
RNF4P78317 AC097463.2-201ENST00000421074 142 ntBASIC3.42□□□□□ -1.86
RNF4P78317 EIF4EP4-201ENST00000424916 578 ntBASIC3.42□□□□□ -1.86
RNF4P78317 AC009414.1-201ENST00000427200 443 ntBASIC3.42□□□□□ -1.86
RNF4P78317 AL358232.1-201ENST00000448030 501 ntBASIC3.42□□□□□ -1.86
RNF4P78317 RBMY2UP-201ENST00000453474 324 ntBASIC3.42□□□□□ -1.86
RNF4P78317 AC146507.2-201ENST00000460608 476 ntBASIC3.42□□□□□ -1.86
RNF4P78317 AC008011.1-201ENST00000545989 227 ntBASIC3.42□□□□□ -1.86
RNF4P78317 MIR3158-1-201ENST00000583596 81 ntBASIC3.42□□□□□ -1.86
RNF4P78317 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.42□□□□□ -1.86
RNF4P78317 AP000553.6-201ENST00000641242 118 ntBASIC3.42□□□□□ -1.86
RNF4P78317 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
RNF4P78317 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.41□□□□□ -1.86
RNF4P78317 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.41□□□□□ -1.86
RNF4P78317 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
RNF4P78317 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
RNF4P78317 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.41□□□□□ -1.86
RNF4P78317 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
RNF4P78317 MFSD8-236ENST00000641509 4050 ntBASIC3.41□□□□□ -1.86
RNF4P78317 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
RNF4P78317 RNU1-105P-201ENST00000363470 161 ntBASIC3.41□□□□□ -1.86
RNF4P78317 RNU6-1048P-201ENST00000364054 107 ntBASIC3.41□□□□□ -1.86
RNF4P78317 RNU6-801P-201ENST00000364087 105 ntBASIC3.41□□□□□ -1.86
RNF4P78317 RNA5SP51-201ENST00000364750 119 ntBASIC3.41□□□□□ -1.86
RNF4P78317 RNU6-1130P-201ENST00000365434 107 ntBASIC3.41□□□□□ -1.86
RNF4P78317 SNORD116-18-201ENST00000383961 92 ntBASIC3.41□□□□□ -1.86
RNF4P78317 SNORA5A-201ENST00000384111 134 ntBASIC3.41□□□□□ -1.86
RNF4P78317 MIR200C-201ENST00000384980 68 ntBASIC3.41□□□□□ -1.86
RNF4P78317 GOT2P5-201ENST00000433995 546 ntBASIC3.41□□□□□ -1.86
RNF4P78317 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.41□□□□□ -1.86
RNF4P78317 AC006445.1-201ENST00000491925 405 ntBASIC3.41□□□□□ -1.86
RNF4P78317 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.41□□□□□ -1.86
RNF4P78317 RNU6-711P-201ENST00000517255 106 ntBASIC3.41□□□□□ -1.86
RNF4P78317 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.41□□□□□ -1.86
RNF4P78317 RPL30P11-203ENST00000598995 310 ntBASIC3.41□□□□□ -1.86
RNF4P78317 AC004832.4-201ENST00000608952 331 ntBASIC3.41□□□□□ -1.86
RNF4P78317 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
RNF4P78317 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.41□□□□□ -1.86
RNF4P78317 AC000403.1-201ENST00000613696 3585 ntBASIC3.41□□□□□ -1.86
RNF4P78317 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
RNF4P78317 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
RNF4P78317 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.41□□□□□ -1.86
RNF4P78317 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.4□□□□□ -1.86
RNF4P78317 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
RNF4P78317 AC068700.1-201ENST00000565862 3754 ntBASIC3.4□□□□□ -1.86
RNF4P78317 Y_RNA.7-201ENST00000362352 102 ntBASIC3.4□□□□□ -1.87
RNF4P78317 Y_RNA.182-201ENST00000363880 111 ntBASIC3.4□□□□□ -1.87
RNF4P78317 RNU6-1305P-201ENST00000364353 104 ntBASIC3.4□□□□□ -1.87
RNF4P78317 Y_RNA.238-201ENST00000364441 102 ntBASIC3.4□□□□□ -1.87
RNF4P78317 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
RNF4P78317 AL359837.1-201ENST00000381357 287 ntBASIC3.4□□□□□ -1.87
RNF4P78317 Y_RNA.412-201ENST00000384001 104 ntBASIC3.4□□□□□ -1.87
RNF4P78317 MIR548B-201ENST00000385247 97 ntBASIC3.4□□□□□ -1.87
RNF4P78317 SNORA40.19-201ENST00000390846 128 ntBASIC3.4□□□□□ -1.87
RNF4P78317 SNORA48.7-201ENST00000391302 135 ntBASIC3.4□□□□□ -1.87
RNF4P78317 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.4□□□□□ -1.87
RNF4P78317 RPL21P129-201ENST00000491732 478 ntBASIC3.4□□□□□ -1.87
RNF4P78317 RN7SKP18-201ENST00000516005 275 ntBASIC3.4□□□□□ -1.87
RNF4P78317 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.4□□□□□ -1.87
RNF4P78317 AC100767.1-201ENST00000528178 123 ntBASIC3.4□□□□□ -1.87
RNF4P78317 MIR4765-201ENST00000585007 77 ntBASIC3.4□□□□□ -1.87
RNF4P78317 AL133393.1-201ENST00000603277 287 ntBASIC3.4□□□□□ -1.87
RNF4P78317 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms